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Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy

BACKGROUND AND OBJECTIVE: Though there are many advantages of pegylated interferon‐α (PegIFN‐α) treatment to chronic hepatitis B (CHB) patients, the response rate of PegIFN‐α is only 30 ~ 40%. Therefore, it is important to explore predictors at baseline and establish models to improve the response r...

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Autores principales: Shang, Hongyan, Hu, Yuhai, Guo, Hongyan, Lai, Ruimin, Fu, Ya, Xu, Siyi, Zeng, Yongbin, Xun, Zhen, Liu, Can, Wu, Wennan, Guo, Jianhui, Ou, Qishui, Chen, Tianbin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9701889/
https://www.ncbi.nlm.nih.gov/pubmed/36181316
http://dx.doi.org/10.1002/jcla.24667
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author Shang, Hongyan
Hu, Yuhai
Guo, Hongyan
Lai, Ruimin
Fu, Ya
Xu, Siyi
Zeng, Yongbin
Xun, Zhen
Liu, Can
Wu, Wennan
Guo, Jianhui
Ou, Qishui
Chen, Tianbin
author_facet Shang, Hongyan
Hu, Yuhai
Guo, Hongyan
Lai, Ruimin
Fu, Ya
Xu, Siyi
Zeng, Yongbin
Xun, Zhen
Liu, Can
Wu, Wennan
Guo, Jianhui
Ou, Qishui
Chen, Tianbin
author_sort Shang, Hongyan
collection PubMed
description BACKGROUND AND OBJECTIVE: Though there are many advantages of pegylated interferon‐α (PegIFN‐α) treatment to chronic hepatitis B (CHB) patients, the response rate of PegIFN‐α is only 30 ~ 40%. Therefore, it is important to explore predictors at baseline and establish models to improve the response rate of PegIFN‐α. METHODS: We randomly divided 260 HBeAg‐positive CHB patients who were not previously treated and received PegIFN‐α monotherapy (180 μg/week) into a training dataset (70%) and testing dataset (30%). The intersect features were extracted from 50 routine laboratory variables using the recursive feature elimination method algorithm, Boruta algorithm, and Least Absolute Shrinkage and Selection Operator Regression algorithm in the training dataset. After that, based on the intersect features, eight machine learning models including Logistic Regression, k‐Nearest Neighbors, Support Vector Machine, Decision Tree, Random Forest, Gradient Boosting, Extreme Gradient Boosting (XGBoost), and Naïve Bayes were applied to evaluate HBeAg seroconversion in HBeAg‐positive CHB patients receiving PegIFN‐α monotherapy in the training dataset and testing dataset. RESULTS: XGBoost model showed the best performance, which had largest AUROC (0.900, 95% CI: 0.85–0.95 and 0.910, 95% CI: 0.84–0.98, in training dataset and testing dataset, respectively), and the best calibration curve performance to predict HBeAg seroconversion. The importance of XGBoost model indicated that treatment time contributed greatest to HBeAg seroconversion, followed by HBV DNA(log), HBeAg, HBeAb, HBcAb, ALT, triglyceride, and ALP. CONCLUSIONS: XGBoost model based on common laboratory variables had good performance in predicting HBeAg seroconversion in HBeAg‐positive CHB patients receiving PegIFN‐α monotherapy.
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spelling pubmed-97018892022-11-28 Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy Shang, Hongyan Hu, Yuhai Guo, Hongyan Lai, Ruimin Fu, Ya Xu, Siyi Zeng, Yongbin Xun, Zhen Liu, Can Wu, Wennan Guo, Jianhui Ou, Qishui Chen, Tianbin J Clin Lab Anal Research Articles BACKGROUND AND OBJECTIVE: Though there are many advantages of pegylated interferon‐α (PegIFN‐α) treatment to chronic hepatitis B (CHB) patients, the response rate of PegIFN‐α is only 30 ~ 40%. Therefore, it is important to explore predictors at baseline and establish models to improve the response rate of PegIFN‐α. METHODS: We randomly divided 260 HBeAg‐positive CHB patients who were not previously treated and received PegIFN‐α monotherapy (180 μg/week) into a training dataset (70%) and testing dataset (30%). The intersect features were extracted from 50 routine laboratory variables using the recursive feature elimination method algorithm, Boruta algorithm, and Least Absolute Shrinkage and Selection Operator Regression algorithm in the training dataset. After that, based on the intersect features, eight machine learning models including Logistic Regression, k‐Nearest Neighbors, Support Vector Machine, Decision Tree, Random Forest, Gradient Boosting, Extreme Gradient Boosting (XGBoost), and Naïve Bayes were applied to evaluate HBeAg seroconversion in HBeAg‐positive CHB patients receiving PegIFN‐α monotherapy in the training dataset and testing dataset. RESULTS: XGBoost model showed the best performance, which had largest AUROC (0.900, 95% CI: 0.85–0.95 and 0.910, 95% CI: 0.84–0.98, in training dataset and testing dataset, respectively), and the best calibration curve performance to predict HBeAg seroconversion. The importance of XGBoost model indicated that treatment time contributed greatest to HBeAg seroconversion, followed by HBV DNA(log), HBeAg, HBeAb, HBcAb, ALT, triglyceride, and ALP. CONCLUSIONS: XGBoost model based on common laboratory variables had good performance in predicting HBeAg seroconversion in HBeAg‐positive CHB patients receiving PegIFN‐α monotherapy. John Wiley and Sons Inc. 2022-09-30 /pmc/articles/PMC9701889/ /pubmed/36181316 http://dx.doi.org/10.1002/jcla.24667 Text en © 2022 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Shang, Hongyan
Hu, Yuhai
Guo, Hongyan
Lai, Ruimin
Fu, Ya
Xu, Siyi
Zeng, Yongbin
Xun, Zhen
Liu, Can
Wu, Wennan
Guo, Jianhui
Ou, Qishui
Chen, Tianbin
Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy
title Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy
title_full Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy
title_fullStr Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy
title_full_unstemmed Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy
title_short Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy
title_sort using machine learning models to predict hbeag seroconversion in chb patients receiving pegylated interferon‐α monotherapy
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9701889/
https://www.ncbi.nlm.nih.gov/pubmed/36181316
http://dx.doi.org/10.1002/jcla.24667
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