Cargando…
Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy
BACKGROUND AND OBJECTIVE: Though there are many advantages of pegylated interferon‐α (PegIFN‐α) treatment to chronic hepatitis B (CHB) patients, the response rate of PegIFN‐α is only 30 ~ 40%. Therefore, it is important to explore predictors at baseline and establish models to improve the response r...
Autores principales: | , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9701889/ https://www.ncbi.nlm.nih.gov/pubmed/36181316 http://dx.doi.org/10.1002/jcla.24667 |
_version_ | 1784839641785958400 |
---|---|
author | Shang, Hongyan Hu, Yuhai Guo, Hongyan Lai, Ruimin Fu, Ya Xu, Siyi Zeng, Yongbin Xun, Zhen Liu, Can Wu, Wennan Guo, Jianhui Ou, Qishui Chen, Tianbin |
author_facet | Shang, Hongyan Hu, Yuhai Guo, Hongyan Lai, Ruimin Fu, Ya Xu, Siyi Zeng, Yongbin Xun, Zhen Liu, Can Wu, Wennan Guo, Jianhui Ou, Qishui Chen, Tianbin |
author_sort | Shang, Hongyan |
collection | PubMed |
description | BACKGROUND AND OBJECTIVE: Though there are many advantages of pegylated interferon‐α (PegIFN‐α) treatment to chronic hepatitis B (CHB) patients, the response rate of PegIFN‐α is only 30 ~ 40%. Therefore, it is important to explore predictors at baseline and establish models to improve the response rate of PegIFN‐α. METHODS: We randomly divided 260 HBeAg‐positive CHB patients who were not previously treated and received PegIFN‐α monotherapy (180 μg/week) into a training dataset (70%) and testing dataset (30%). The intersect features were extracted from 50 routine laboratory variables using the recursive feature elimination method algorithm, Boruta algorithm, and Least Absolute Shrinkage and Selection Operator Regression algorithm in the training dataset. After that, based on the intersect features, eight machine learning models including Logistic Regression, k‐Nearest Neighbors, Support Vector Machine, Decision Tree, Random Forest, Gradient Boosting, Extreme Gradient Boosting (XGBoost), and Naïve Bayes were applied to evaluate HBeAg seroconversion in HBeAg‐positive CHB patients receiving PegIFN‐α monotherapy in the training dataset and testing dataset. RESULTS: XGBoost model showed the best performance, which had largest AUROC (0.900, 95% CI: 0.85–0.95 and 0.910, 95% CI: 0.84–0.98, in training dataset and testing dataset, respectively), and the best calibration curve performance to predict HBeAg seroconversion. The importance of XGBoost model indicated that treatment time contributed greatest to HBeAg seroconversion, followed by HBV DNA(log), HBeAg, HBeAb, HBcAb, ALT, triglyceride, and ALP. CONCLUSIONS: XGBoost model based on common laboratory variables had good performance in predicting HBeAg seroconversion in HBeAg‐positive CHB patients receiving PegIFN‐α monotherapy. |
format | Online Article Text |
id | pubmed-9701889 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97018892022-11-28 Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy Shang, Hongyan Hu, Yuhai Guo, Hongyan Lai, Ruimin Fu, Ya Xu, Siyi Zeng, Yongbin Xun, Zhen Liu, Can Wu, Wennan Guo, Jianhui Ou, Qishui Chen, Tianbin J Clin Lab Anal Research Articles BACKGROUND AND OBJECTIVE: Though there are many advantages of pegylated interferon‐α (PegIFN‐α) treatment to chronic hepatitis B (CHB) patients, the response rate of PegIFN‐α is only 30 ~ 40%. Therefore, it is important to explore predictors at baseline and establish models to improve the response rate of PegIFN‐α. METHODS: We randomly divided 260 HBeAg‐positive CHB patients who were not previously treated and received PegIFN‐α monotherapy (180 μg/week) into a training dataset (70%) and testing dataset (30%). The intersect features were extracted from 50 routine laboratory variables using the recursive feature elimination method algorithm, Boruta algorithm, and Least Absolute Shrinkage and Selection Operator Regression algorithm in the training dataset. After that, based on the intersect features, eight machine learning models including Logistic Regression, k‐Nearest Neighbors, Support Vector Machine, Decision Tree, Random Forest, Gradient Boosting, Extreme Gradient Boosting (XGBoost), and Naïve Bayes were applied to evaluate HBeAg seroconversion in HBeAg‐positive CHB patients receiving PegIFN‐α monotherapy in the training dataset and testing dataset. RESULTS: XGBoost model showed the best performance, which had largest AUROC (0.900, 95% CI: 0.85–0.95 and 0.910, 95% CI: 0.84–0.98, in training dataset and testing dataset, respectively), and the best calibration curve performance to predict HBeAg seroconversion. The importance of XGBoost model indicated that treatment time contributed greatest to HBeAg seroconversion, followed by HBV DNA(log), HBeAg, HBeAb, HBcAb, ALT, triglyceride, and ALP. CONCLUSIONS: XGBoost model based on common laboratory variables had good performance in predicting HBeAg seroconversion in HBeAg‐positive CHB patients receiving PegIFN‐α monotherapy. John Wiley and Sons Inc. 2022-09-30 /pmc/articles/PMC9701889/ /pubmed/36181316 http://dx.doi.org/10.1002/jcla.24667 Text en © 2022 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Shang, Hongyan Hu, Yuhai Guo, Hongyan Lai, Ruimin Fu, Ya Xu, Siyi Zeng, Yongbin Xun, Zhen Liu, Can Wu, Wennan Guo, Jianhui Ou, Qishui Chen, Tianbin Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy |
title | Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy |
title_full | Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy |
title_fullStr | Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy |
title_full_unstemmed | Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy |
title_short | Using machine learning models to predict HBeAg seroconversion in CHB patients receiving pegylated interferon‐α monotherapy |
title_sort | using machine learning models to predict hbeag seroconversion in chb patients receiving pegylated interferon‐α monotherapy |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9701889/ https://www.ncbi.nlm.nih.gov/pubmed/36181316 http://dx.doi.org/10.1002/jcla.24667 |
work_keys_str_mv | AT shanghongyan usingmachinelearningmodelstopredicthbeagseroconversioninchbpatientsreceivingpegylatedinterferonamonotherapy AT huyuhai usingmachinelearningmodelstopredicthbeagseroconversioninchbpatientsreceivingpegylatedinterferonamonotherapy AT guohongyan usingmachinelearningmodelstopredicthbeagseroconversioninchbpatientsreceivingpegylatedinterferonamonotherapy AT lairuimin usingmachinelearningmodelstopredicthbeagseroconversioninchbpatientsreceivingpegylatedinterferonamonotherapy AT fuya usingmachinelearningmodelstopredicthbeagseroconversioninchbpatientsreceivingpegylatedinterferonamonotherapy AT xusiyi usingmachinelearningmodelstopredicthbeagseroconversioninchbpatientsreceivingpegylatedinterferonamonotherapy AT zengyongbin usingmachinelearningmodelstopredicthbeagseroconversioninchbpatientsreceivingpegylatedinterferonamonotherapy AT xunzhen usingmachinelearningmodelstopredicthbeagseroconversioninchbpatientsreceivingpegylatedinterferonamonotherapy AT liucan usingmachinelearningmodelstopredicthbeagseroconversioninchbpatientsreceivingpegylatedinterferonamonotherapy AT wuwennan usingmachinelearningmodelstopredicthbeagseroconversioninchbpatientsreceivingpegylatedinterferonamonotherapy AT guojianhui usingmachinelearningmodelstopredicthbeagseroconversioninchbpatientsreceivingpegylatedinterferonamonotherapy AT ouqishui usingmachinelearningmodelstopredicthbeagseroconversioninchbpatientsreceivingpegylatedinterferonamonotherapy AT chentianbin usingmachinelearningmodelstopredicthbeagseroconversioninchbpatientsreceivingpegylatedinterferonamonotherapy |