Cargando…
GRAP2 is a prognostic biomarker and correlated with immune infiltration in lung adenocarcinoma
BACKGROUND: GRAP2 is an adaptor protein involved in leukocyte signal activation; however, the prognostic value of GRAP2 and its correlation with immune infiltration in lung adenocarcinoma (LUAD) are unclear. METHODS: Original data were downloaded from the TCGA database and Gene Expression Omnibus (G...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9701895/ https://www.ncbi.nlm.nih.gov/pubmed/36181310 http://dx.doi.org/10.1002/jcla.24662 |
_version_ | 1784839643291713536 |
---|---|
author | Song, Shimao Deng, Xinzhou Jiang, Shan Tian, Chao Han, Jiahui Chai, Jingjing Li, Na Yan, Yutao Luo, Zhiguo |
author_facet | Song, Shimao Deng, Xinzhou Jiang, Shan Tian, Chao Han, Jiahui Chai, Jingjing Li, Na Yan, Yutao Luo, Zhiguo |
author_sort | Song, Shimao |
collection | PubMed |
description | BACKGROUND: GRAP2 is an adaptor protein involved in leukocyte signal activation; however, the prognostic value of GRAP2 and its correlation with immune infiltration in lung adenocarcinoma (LUAD) are unclear. METHODS: Original data were downloaded from the TCGA database and Gene Expression Omnibus (GEO) database. GRAP2 expression was analyzed with the TCGA and TIMER databases. We evaluated the influence of GRAP2 on clinical prognosis using the Kaplan–Meier plotter, GEO, and GEPIA database. The TIMER and TISIDB databases were used to investigate correlations between GRAP2 expression and cancer immune characteristics. Finally, we confirmed the expression of GRAP2 in LUAD by immunohistochemistry staining. RESULTS: The transcription levels of GRAP2 were significantly lower in several human cancer types, including LUAD, than in adjacent normal tissues. Immunohistochemistry staining confirmed that LUAD tumor tissues had lower GRAP2 protein expression levels than adjacent normal tissues. GRAP2 downregulation was associated with poorer overall survival, pathologic stage, T stage, N stage, and primary therapy outcome in LUAD. Mechanistically, we found a hub gene set that included a total of 91 genes coexpressed with GRAP2, which were closely related to the immune response in LUAD. The expression levels of GRAP2 were positively correlated with the infiltration levels of multiple immune cells and the cumulative survival time of a few immune cells. GRAP2 expression was found to be positively correlated with that of multiple immune markers, chemokines, chemokine receptors, and MHC molecules in LUAD. CONCLUSIONS: GRAP2 can be used as a biomarker for assessing prognosis and immune infiltration levels in LUAD. |
format | Online Article Text |
id | pubmed-9701895 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97018952022-11-28 GRAP2 is a prognostic biomarker and correlated with immune infiltration in lung adenocarcinoma Song, Shimao Deng, Xinzhou Jiang, Shan Tian, Chao Han, Jiahui Chai, Jingjing Li, Na Yan, Yutao Luo, Zhiguo J Clin Lab Anal Research Articles BACKGROUND: GRAP2 is an adaptor protein involved in leukocyte signal activation; however, the prognostic value of GRAP2 and its correlation with immune infiltration in lung adenocarcinoma (LUAD) are unclear. METHODS: Original data were downloaded from the TCGA database and Gene Expression Omnibus (GEO) database. GRAP2 expression was analyzed with the TCGA and TIMER databases. We evaluated the influence of GRAP2 on clinical prognosis using the Kaplan–Meier plotter, GEO, and GEPIA database. The TIMER and TISIDB databases were used to investigate correlations between GRAP2 expression and cancer immune characteristics. Finally, we confirmed the expression of GRAP2 in LUAD by immunohistochemistry staining. RESULTS: The transcription levels of GRAP2 were significantly lower in several human cancer types, including LUAD, than in adjacent normal tissues. Immunohistochemistry staining confirmed that LUAD tumor tissues had lower GRAP2 protein expression levels than adjacent normal tissues. GRAP2 downregulation was associated with poorer overall survival, pathologic stage, T stage, N stage, and primary therapy outcome in LUAD. Mechanistically, we found a hub gene set that included a total of 91 genes coexpressed with GRAP2, which were closely related to the immune response in LUAD. The expression levels of GRAP2 were positively correlated with the infiltration levels of multiple immune cells and the cumulative survival time of a few immune cells. GRAP2 expression was found to be positively correlated with that of multiple immune markers, chemokines, chemokine receptors, and MHC molecules in LUAD. CONCLUSIONS: GRAP2 can be used as a biomarker for assessing prognosis and immune infiltration levels in LUAD. John Wiley and Sons Inc. 2022-09-30 /pmc/articles/PMC9701895/ /pubmed/36181310 http://dx.doi.org/10.1002/jcla.24662 Text en © 2022 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Song, Shimao Deng, Xinzhou Jiang, Shan Tian, Chao Han, Jiahui Chai, Jingjing Li, Na Yan, Yutao Luo, Zhiguo GRAP2 is a prognostic biomarker and correlated with immune infiltration in lung adenocarcinoma |
title |
GRAP2 is a prognostic biomarker and correlated with immune infiltration in lung adenocarcinoma |
title_full |
GRAP2 is a prognostic biomarker and correlated with immune infiltration in lung adenocarcinoma |
title_fullStr |
GRAP2 is a prognostic biomarker and correlated with immune infiltration in lung adenocarcinoma |
title_full_unstemmed |
GRAP2 is a prognostic biomarker and correlated with immune infiltration in lung adenocarcinoma |
title_short |
GRAP2 is a prognostic biomarker and correlated with immune infiltration in lung adenocarcinoma |
title_sort | grap2 is a prognostic biomarker and correlated with immune infiltration in lung adenocarcinoma |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9701895/ https://www.ncbi.nlm.nih.gov/pubmed/36181310 http://dx.doi.org/10.1002/jcla.24662 |
work_keys_str_mv | AT songshimao grap2isaprognosticbiomarkerandcorrelatedwithimmuneinfiltrationinlungadenocarcinoma AT dengxinzhou grap2isaprognosticbiomarkerandcorrelatedwithimmuneinfiltrationinlungadenocarcinoma AT jiangshan grap2isaprognosticbiomarkerandcorrelatedwithimmuneinfiltrationinlungadenocarcinoma AT tianchao grap2isaprognosticbiomarkerandcorrelatedwithimmuneinfiltrationinlungadenocarcinoma AT hanjiahui grap2isaprognosticbiomarkerandcorrelatedwithimmuneinfiltrationinlungadenocarcinoma AT chaijingjing grap2isaprognosticbiomarkerandcorrelatedwithimmuneinfiltrationinlungadenocarcinoma AT lina grap2isaprognosticbiomarkerandcorrelatedwithimmuneinfiltrationinlungadenocarcinoma AT yanyutao grap2isaprognosticbiomarkerandcorrelatedwithimmuneinfiltrationinlungadenocarcinoma AT luozhiguo grap2isaprognosticbiomarkerandcorrelatedwithimmuneinfiltrationinlungadenocarcinoma |