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Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., Isolated from Soil

Two gram-negative, catalase-positive, strictly aerobic, and white colony-forming bacteria, strains H242(T) and B156(T), were isolated from soil in South Korea. Cells of strain H242(T) were oxidase-positive and non-motile short rods, while those of strain B156(T) were oxidase-negative and long non-mo...

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Autores principales: Khan, Shehzad Abid, Kim, Hyung Min, Baek, Ju Hye, Jung, Hye Su, Jeon, Che Ok
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Korean Society for Microbiology and Biotechnology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9705899/
https://www.ncbi.nlm.nih.gov/pubmed/34319259
http://dx.doi.org/10.4014/jmb.2105.05023
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author Khan, Shehzad Abid
Kim, Hyung Min
Baek, Ju Hye
Jung, Hye Su
Jeon, Che Ok
author_facet Khan, Shehzad Abid
Kim, Hyung Min
Baek, Ju Hye
Jung, Hye Su
Jeon, Che Ok
author_sort Khan, Shehzad Abid
collection PubMed
description Two gram-negative, catalase-positive, strictly aerobic, and white colony-forming bacteria, strains H242(T) and B156(T), were isolated from soil in South Korea. Cells of strain H242(T) were oxidase-positive and non-motile short rods, while those of strain B156(T) were oxidase-negative and long non-motile rods. Ubiquinone-8 was identified as the sole isoprenoid quinone in both strains. C(16:0), cyclo-C(17:0), and summed feature 3 (C(16:1) ω7c and/or C(16:1) ω6c) and phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol were identified in both strains as the major cellular fatty acids and polar lipids, respectively. The DNA G+C contents of strains H242(T) and B156(T) were 69.4 mol% and 69.3 mol%, respectively. Phylogenetic analyses based on 16S rRNA and 92 concatenated core gene sequences revealed that strains H242(T) and B156(T) formed distinct phylogenic lineages from other Ramlibacter type strains. The DNA-DNA hybridization (DDH) value between strains H242(T) and B156(T) was 24.6%. Strains H242(T) and B156(T) were most closely related to Ramlibacter ginsenosidimutans BXN5-27(T) and Ramlibacter monticola G-3-2(T) with 98.4% and 98.6% 16S rRNA gene sequence similarities, respectively. Digital DDH values between strain H242(T) and R. ginsenosidimutans and between strain B156(T) and R. monticola were 23.5% and 26.1%, respectively. Phenotypic, chemotaxonomic, and molecular analyses indicated that strains H242(T) and B156(T) represent two novel species of the genus Ramlibacter, for which the names Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., respectively, are proposed. The type strains of R. terrae and R. montanisoli are H242(T) (=KACC 21667(T) =JCM 33922(T)) and B156(T) (=KACC 21665(T) =JCM 33920(T)), respectively.
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spelling pubmed-97058992022-12-13 Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., Isolated from Soil Khan, Shehzad Abid Kim, Hyung Min Baek, Ju Hye Jung, Hye Su Jeon, Che Ok J Microbiol Biotechnol Research article Two gram-negative, catalase-positive, strictly aerobic, and white colony-forming bacteria, strains H242(T) and B156(T), were isolated from soil in South Korea. Cells of strain H242(T) were oxidase-positive and non-motile short rods, while those of strain B156(T) were oxidase-negative and long non-motile rods. Ubiquinone-8 was identified as the sole isoprenoid quinone in both strains. C(16:0), cyclo-C(17:0), and summed feature 3 (C(16:1) ω7c and/or C(16:1) ω6c) and phosphatidylethanolamine, phosphatidylglycerol, and diphosphatidylglycerol were identified in both strains as the major cellular fatty acids and polar lipids, respectively. The DNA G+C contents of strains H242(T) and B156(T) were 69.4 mol% and 69.3 mol%, respectively. Phylogenetic analyses based on 16S rRNA and 92 concatenated core gene sequences revealed that strains H242(T) and B156(T) formed distinct phylogenic lineages from other Ramlibacter type strains. The DNA-DNA hybridization (DDH) value between strains H242(T) and B156(T) was 24.6%. Strains H242(T) and B156(T) were most closely related to Ramlibacter ginsenosidimutans BXN5-27(T) and Ramlibacter monticola G-3-2(T) with 98.4% and 98.6% 16S rRNA gene sequence similarities, respectively. Digital DDH values between strain H242(T) and R. ginsenosidimutans and between strain B156(T) and R. monticola were 23.5% and 26.1%, respectively. Phenotypic, chemotaxonomic, and molecular analyses indicated that strains H242(T) and B156(T) represent two novel species of the genus Ramlibacter, for which the names Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., respectively, are proposed. The type strains of R. terrae and R. montanisoli are H242(T) (=KACC 21667(T) =JCM 33922(T)) and B156(T) (=KACC 21665(T) =JCM 33920(T)), respectively. The Korean Society for Microbiology and Biotechnology 2021-09-28 2021-07-21 /pmc/articles/PMC9705899/ /pubmed/34319259 http://dx.doi.org/10.4014/jmb.2105.05023 Text en Copyright © 2021 by The Korean Society for Microbiology and Biotechnology https://creativecommons.org/licenses/by/4.0/This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research article
Khan, Shehzad Abid
Kim, Hyung Min
Baek, Ju Hye
Jung, Hye Su
Jeon, Che Ok
Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., Isolated from Soil
title Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., Isolated from Soil
title_full Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., Isolated from Soil
title_fullStr Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., Isolated from Soil
title_full_unstemmed Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., Isolated from Soil
title_short Ramlibacter terrae sp. nov. and Ramlibacter montanisoli sp. nov., Isolated from Soil
title_sort ramlibacter terrae sp. nov. and ramlibacter montanisoli sp. nov., isolated from soil
topic Research article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9705899/
https://www.ncbi.nlm.nih.gov/pubmed/34319259
http://dx.doi.org/10.4014/jmb.2105.05023
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