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Rapid and Visual Detection of Vibrio parahaemolyticus in Aquatic Foods Using bla(CARB-17) Gene-Based Loop-Mediated Isothermal Amplification with Lateral Flow Dipstick (LAMP-LFD)
Vibrio parahaemolyticus is recognized as one of the most important foodborne pathogens responsible for gastroenteritis in humans. The bla(CARB-17) gene is an intrinsic β-lactamase gene and a novel species-specific genetic marker of V. parahaemolyticus. In this study, a loop-mediated isother...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Korean Society for Microbiology and Biotechnology
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9705909/ https://www.ncbi.nlm.nih.gov/pubmed/34489378 http://dx.doi.org/10.4014/jmb.2107.07022 |
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author | Hu, Yuan-qing Huang, Xian-hui Guo, Li-qing Shen, Zi-chen LV, Lin-xue Li, Feng-xia Zhou, Zan-hu Zhang, Dan-feng |
author_facet | Hu, Yuan-qing Huang, Xian-hui Guo, Li-qing Shen, Zi-chen LV, Lin-xue Li, Feng-xia Zhou, Zan-hu Zhang, Dan-feng |
author_sort | Hu, Yuan-qing |
collection | PubMed |
description | Vibrio parahaemolyticus is recognized as one of the most important foodborne pathogens responsible for gastroenteritis in humans. The bla(CARB-17) gene is an intrinsic β-lactamase gene and a novel species-specific genetic marker of V. parahaemolyticus. In this study, a loop-mediated isothermal amplification (LAMP) assay combined with a lateral flow dipstick (LFD) was developed targeting this bla(CARB-17) gene. The specificity of LAMP-LFD was ascertained by detecting V. parahaemolyticus ATCC 17802 and seven other non-V. parahaemolyticus strains. Finally, the practicability of LAMP-LFD was confirmed by detection with V. parahaemolyticus-contaminated samples and natural food samples. The results showed that the optimized reaction parameters of LAMP are as follows: 2.4 mmol/l Mg(2+), 0.96 mmol/l dNTPs, 4.8 U Bst DNA polymerase, and an 8:1 ratio of inner primer to outer primer, at 63°C for 40 min. The optimized reaction time of the LFD assay is 60 min. Cross-reactivity analysis with the seven non-V. parahaemolyticus strains showed that LAMP-LFD was exclusively specific for V. parahaemolyticus. The detection limit of LAMP-LFD for V. parahaemolyticus genomic DNA was 2.1 × 10(-4) ng/μl, corresponding to 630 fg/reaction and displaying a sensitivity that is 100-fold higher than that of conventional PCR. LAMP-LFD in a spiking study revealed a detection limit of approximately 6 CFU/ml, which was similar with conventional PCR. The developed LAMP-LFD specifically identified the 10 V. parahaemolyticus isolates from 30 seafood samples, suggesting that this LAMP-LFD may be a suitable diagnostic method for detecting V. parahaemolyticus in aquatic foods. |
format | Online Article Text |
id | pubmed-9705909 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The Korean Society for Microbiology and Biotechnology |
record_format | MEDLINE/PubMed |
spelling | pubmed-97059092022-12-13 Rapid and Visual Detection of Vibrio parahaemolyticus in Aquatic Foods Using bla(CARB-17) Gene-Based Loop-Mediated Isothermal Amplification with Lateral Flow Dipstick (LAMP-LFD) Hu, Yuan-qing Huang, Xian-hui Guo, Li-qing Shen, Zi-chen LV, Lin-xue Li, Feng-xia Zhou, Zan-hu Zhang, Dan-feng J Microbiol Biotechnol Research article Vibrio parahaemolyticus is recognized as one of the most important foodborne pathogens responsible for gastroenteritis in humans. The bla(CARB-17) gene is an intrinsic β-lactamase gene and a novel species-specific genetic marker of V. parahaemolyticus. In this study, a loop-mediated isothermal amplification (LAMP) assay combined with a lateral flow dipstick (LFD) was developed targeting this bla(CARB-17) gene. The specificity of LAMP-LFD was ascertained by detecting V. parahaemolyticus ATCC 17802 and seven other non-V. parahaemolyticus strains. Finally, the practicability of LAMP-LFD was confirmed by detection with V. parahaemolyticus-contaminated samples and natural food samples. The results showed that the optimized reaction parameters of LAMP are as follows: 2.4 mmol/l Mg(2+), 0.96 mmol/l dNTPs, 4.8 U Bst DNA polymerase, and an 8:1 ratio of inner primer to outer primer, at 63°C for 40 min. The optimized reaction time of the LFD assay is 60 min. Cross-reactivity analysis with the seven non-V. parahaemolyticus strains showed that LAMP-LFD was exclusively specific for V. parahaemolyticus. The detection limit of LAMP-LFD for V. parahaemolyticus genomic DNA was 2.1 × 10(-4) ng/μl, corresponding to 630 fg/reaction and displaying a sensitivity that is 100-fold higher than that of conventional PCR. LAMP-LFD in a spiking study revealed a detection limit of approximately 6 CFU/ml, which was similar with conventional PCR. The developed LAMP-LFD specifically identified the 10 V. parahaemolyticus isolates from 30 seafood samples, suggesting that this LAMP-LFD may be a suitable diagnostic method for detecting V. parahaemolyticus in aquatic foods. The Korean Society for Microbiology and Biotechnology 2021-12-28 2021-09-04 /pmc/articles/PMC9705909/ /pubmed/34489378 http://dx.doi.org/10.4014/jmb.2107.07022 Text en Copyright © 2021 by the authors. Licensee KMB. https://creativecommons.org/licenses/by/4.0/This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research article Hu, Yuan-qing Huang, Xian-hui Guo, Li-qing Shen, Zi-chen LV, Lin-xue Li, Feng-xia Zhou, Zan-hu Zhang, Dan-feng Rapid and Visual Detection of Vibrio parahaemolyticus in Aquatic Foods Using bla(CARB-17) Gene-Based Loop-Mediated Isothermal Amplification with Lateral Flow Dipstick (LAMP-LFD) |
title | Rapid and Visual Detection of Vibrio parahaemolyticus in Aquatic Foods Using bla(CARB-17) Gene-Based Loop-Mediated Isothermal Amplification with Lateral Flow Dipstick (LAMP-LFD) |
title_full | Rapid and Visual Detection of Vibrio parahaemolyticus in Aquatic Foods Using bla(CARB-17) Gene-Based Loop-Mediated Isothermal Amplification with Lateral Flow Dipstick (LAMP-LFD) |
title_fullStr | Rapid and Visual Detection of Vibrio parahaemolyticus in Aquatic Foods Using bla(CARB-17) Gene-Based Loop-Mediated Isothermal Amplification with Lateral Flow Dipstick (LAMP-LFD) |
title_full_unstemmed | Rapid and Visual Detection of Vibrio parahaemolyticus in Aquatic Foods Using bla(CARB-17) Gene-Based Loop-Mediated Isothermal Amplification with Lateral Flow Dipstick (LAMP-LFD) |
title_short | Rapid and Visual Detection of Vibrio parahaemolyticus in Aquatic Foods Using bla(CARB-17) Gene-Based Loop-Mediated Isothermal Amplification with Lateral Flow Dipstick (LAMP-LFD) |
title_sort | rapid and visual detection of vibrio parahaemolyticus in aquatic foods using bla(carb-17) gene-based loop-mediated isothermal amplification with lateral flow dipstick (lamp-lfd) |
topic | Research article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9705909/ https://www.ncbi.nlm.nih.gov/pubmed/34489378 http://dx.doi.org/10.4014/jmb.2107.07022 |
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