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Short PolyA RNA Homopolymers Undergo Mg(2+)-Mediated Kinetically Arrested Condensation

[Image: see text] RNA–RNA interactions have increasingly been recognized for their potential to shape the mesoscale properties of biomolecular condensates, influencing morphology, organization, and material state through networking interactions. While most studies have focused on networking via Wats...

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Autores principales: Tom, Jenna K. A., Onuchic, Paulo L., Deniz, Ashok A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9706566/
https://www.ncbi.nlm.nih.gov/pubmed/36378781
http://dx.doi.org/10.1021/acs.jpcb.2c05935
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author Tom, Jenna K. A.
Onuchic, Paulo L.
Deniz, Ashok A.
author_facet Tom, Jenna K. A.
Onuchic, Paulo L.
Deniz, Ashok A.
author_sort Tom, Jenna K. A.
collection PubMed
description [Image: see text] RNA–RNA interactions have increasingly been recognized for their potential to shape the mesoscale properties of biomolecular condensates, influencing morphology, organization, and material state through networking interactions. While most studies have focused on networking via Watson–Crick base pairing interactions, previous work has suggested a potential for noncanonical RNA–RNA interactions to also give rise to condensation and alter overall material state. Here, we test the phase separation of short polyA RNA (polyrA) homopolymers. We discover and characterize the potential for short polyrA sequences to form RNA condensates at lower Mg(2+) concentrations than previously observed, which appear as internally arrested droplets with slow polyrA diffusion despite continued fusion. Our work also reveals a negative cooperativity effect between the effects of Mg(2+) and Na(+) on polyrA condensation. Finally, we observe that polyrA sequences can act as promoters of phase separation in mixed sequences. These results demonstrate the potential for noncanonical interactions to act as networking stickers, leading to specific condensation properties inherent to polyrA composition and structure, with implications for the fundamental physical chemistry of the system and function of polyA RNA in biology.
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spelling pubmed-97065662022-11-30 Short PolyA RNA Homopolymers Undergo Mg(2+)-Mediated Kinetically Arrested Condensation Tom, Jenna K. A. Onuchic, Paulo L. Deniz, Ashok A. J Phys Chem B [Image: see text] RNA–RNA interactions have increasingly been recognized for their potential to shape the mesoscale properties of biomolecular condensates, influencing morphology, organization, and material state through networking interactions. While most studies have focused on networking via Watson–Crick base pairing interactions, previous work has suggested a potential for noncanonical RNA–RNA interactions to also give rise to condensation and alter overall material state. Here, we test the phase separation of short polyA RNA (polyrA) homopolymers. We discover and characterize the potential for short polyrA sequences to form RNA condensates at lower Mg(2+) concentrations than previously observed, which appear as internally arrested droplets with slow polyrA diffusion despite continued fusion. Our work also reveals a negative cooperativity effect between the effects of Mg(2+) and Na(+) on polyrA condensation. Finally, we observe that polyrA sequences can act as promoters of phase separation in mixed sequences. These results demonstrate the potential for noncanonical interactions to act as networking stickers, leading to specific condensation properties inherent to polyrA composition and structure, with implications for the fundamental physical chemistry of the system and function of polyA RNA in biology. American Chemical Society 2022-11-15 2022-11-24 /pmc/articles/PMC9706566/ /pubmed/36378781 http://dx.doi.org/10.1021/acs.jpcb.2c05935 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Tom, Jenna K. A.
Onuchic, Paulo L.
Deniz, Ashok A.
Short PolyA RNA Homopolymers Undergo Mg(2+)-Mediated Kinetically Arrested Condensation
title Short PolyA RNA Homopolymers Undergo Mg(2+)-Mediated Kinetically Arrested Condensation
title_full Short PolyA RNA Homopolymers Undergo Mg(2+)-Mediated Kinetically Arrested Condensation
title_fullStr Short PolyA RNA Homopolymers Undergo Mg(2+)-Mediated Kinetically Arrested Condensation
title_full_unstemmed Short PolyA RNA Homopolymers Undergo Mg(2+)-Mediated Kinetically Arrested Condensation
title_short Short PolyA RNA Homopolymers Undergo Mg(2+)-Mediated Kinetically Arrested Condensation
title_sort short polya rna homopolymers undergo mg(2+)-mediated kinetically arrested condensation
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9706566/
https://www.ncbi.nlm.nih.gov/pubmed/36378781
http://dx.doi.org/10.1021/acs.jpcb.2c05935
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