Cargando…
Automated lumen segmentation using multi-frame convolutional neural networks in intravascular ultrasound datasets
AIMS: Assessment of minimum lumen areas in intravascular ultrasound (IVUS) pullbacks is time-consuming and demands adequately trained personnel. In this work, we introduce a novel and fully automated pipeline to segment the lumen boundary in IVUS datasets. METHODS AND RESULTS: First, an automated ga...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9707866/ https://www.ncbi.nlm.nih.gov/pubmed/36713961 http://dx.doi.org/10.1093/ehjdh/ztaa014 |
_version_ | 1784840794632355840 |
---|---|
author | Ziemer, Paulo G P Bulant, Carlos A Orlando, José I Maso Talou, Gonzalo D Álvarez, Luis A Mansilla Guedes Bezerra, Cristiano Lemos, Pedro A García-García, Héctor M Blanco, Pablo J |
author_facet | Ziemer, Paulo G P Bulant, Carlos A Orlando, José I Maso Talou, Gonzalo D Álvarez, Luis A Mansilla Guedes Bezerra, Cristiano Lemos, Pedro A García-García, Héctor M Blanco, Pablo J |
author_sort | Ziemer, Paulo G P |
collection | PubMed |
description | AIMS: Assessment of minimum lumen areas in intravascular ultrasound (IVUS) pullbacks is time-consuming and demands adequately trained personnel. In this work, we introduce a novel and fully automated pipeline to segment the lumen boundary in IVUS datasets. METHODS AND RESULTS: First, an automated gating is applied to select end-diastolic frames and bypass saw-tooth artefacts. Second, within a machine learning (ML) environment, we automatically segment the lumen boundary using a multi-frame (MF) convolutional neural network (MFCNN). Finally, we use the theory of Gaussian processes (GPs) to regress the final lumen boundary. The dataset consisted of 85 IVUS pullbacks (52 patients). The dataset was partitioned at the pullback-level using 73 pullbacks for training (20 586 frames), 6 pullbacks for validation (1692 frames), and 6 for testing (1692 frames). The degree of overlapping, between the ground truth and ML contours, median (interquartile range, IQR) systematically increased from 0.896 (0.874–0.933) for MF1 to 0.925 (0.911–0.948) for MF11. The median (IQR) of the distance error was also reduced from 3.83 (2.94–4.98)% for MF1 to 3.02 (2.25–3.95)% for MF11-GP. The corresponding median (IQR) in the lumen area error remained between 5.49 (2.50–10.50)% for MF1 and 5.12 (2.15–9.00)% for MF11-GP. The dispersion in the relative distance and area errors consistently decreased as we increased the number of frames, and also when the GP regressor was coupled to the MFCNN output. CONCLUSION: These results demonstrate that the proposed ML approach is suitable to effectively segment the lumen boundary in IVUS scans, reducing the burden of costly and time-consuming manual delineation. |
format | Online Article Text |
id | pubmed-9707866 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-97078662023-01-27 Automated lumen segmentation using multi-frame convolutional neural networks in intravascular ultrasound datasets Ziemer, Paulo G P Bulant, Carlos A Orlando, José I Maso Talou, Gonzalo D Álvarez, Luis A Mansilla Guedes Bezerra, Cristiano Lemos, Pedro A García-García, Héctor M Blanco, Pablo J Eur Heart J Digit Health Original Articles AIMS: Assessment of minimum lumen areas in intravascular ultrasound (IVUS) pullbacks is time-consuming and demands adequately trained personnel. In this work, we introduce a novel and fully automated pipeline to segment the lumen boundary in IVUS datasets. METHODS AND RESULTS: First, an automated gating is applied to select end-diastolic frames and bypass saw-tooth artefacts. Second, within a machine learning (ML) environment, we automatically segment the lumen boundary using a multi-frame (MF) convolutional neural network (MFCNN). Finally, we use the theory of Gaussian processes (GPs) to regress the final lumen boundary. The dataset consisted of 85 IVUS pullbacks (52 patients). The dataset was partitioned at the pullback-level using 73 pullbacks for training (20 586 frames), 6 pullbacks for validation (1692 frames), and 6 for testing (1692 frames). The degree of overlapping, between the ground truth and ML contours, median (interquartile range, IQR) systematically increased from 0.896 (0.874–0.933) for MF1 to 0.925 (0.911–0.948) for MF11. The median (IQR) of the distance error was also reduced from 3.83 (2.94–4.98)% for MF1 to 3.02 (2.25–3.95)% for MF11-GP. The corresponding median (IQR) in the lumen area error remained between 5.49 (2.50–10.50)% for MF1 and 5.12 (2.15–9.00)% for MF11-GP. The dispersion in the relative distance and area errors consistently decreased as we increased the number of frames, and also when the GP regressor was coupled to the MFCNN output. CONCLUSION: These results demonstrate that the proposed ML approach is suitable to effectively segment the lumen boundary in IVUS scans, reducing the burden of costly and time-consuming manual delineation. Oxford University Press 2020-11-23 /pmc/articles/PMC9707866/ /pubmed/36713961 http://dx.doi.org/10.1093/ehjdh/ztaa014 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the European Society of Cardiology. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Original Articles Ziemer, Paulo G P Bulant, Carlos A Orlando, José I Maso Talou, Gonzalo D Álvarez, Luis A Mansilla Guedes Bezerra, Cristiano Lemos, Pedro A García-García, Héctor M Blanco, Pablo J Automated lumen segmentation using multi-frame convolutional neural networks in intravascular ultrasound datasets |
title | Automated lumen segmentation using multi-frame convolutional neural networks in intravascular ultrasound datasets |
title_full | Automated lumen segmentation using multi-frame convolutional neural networks in intravascular ultrasound datasets |
title_fullStr | Automated lumen segmentation using multi-frame convolutional neural networks in intravascular ultrasound datasets |
title_full_unstemmed | Automated lumen segmentation using multi-frame convolutional neural networks in intravascular ultrasound datasets |
title_short | Automated lumen segmentation using multi-frame convolutional neural networks in intravascular ultrasound datasets |
title_sort | automated lumen segmentation using multi-frame convolutional neural networks in intravascular ultrasound datasets |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9707866/ https://www.ncbi.nlm.nih.gov/pubmed/36713961 http://dx.doi.org/10.1093/ehjdh/ztaa014 |
work_keys_str_mv | AT ziemerpaulogp automatedlumensegmentationusingmultiframeconvolutionalneuralnetworksinintravascularultrasounddatasets AT bulantcarlosa automatedlumensegmentationusingmultiframeconvolutionalneuralnetworksinintravascularultrasounddatasets AT orlandojosei automatedlumensegmentationusingmultiframeconvolutionalneuralnetworksinintravascularultrasounddatasets AT masotalougonzalod automatedlumensegmentationusingmultiframeconvolutionalneuralnetworksinintravascularultrasounddatasets AT alvarezluisamansilla automatedlumensegmentationusingmultiframeconvolutionalneuralnetworksinintravascularultrasounddatasets AT guedesbezerracristiano automatedlumensegmentationusingmultiframeconvolutionalneuralnetworksinintravascularultrasounddatasets AT lemospedroa automatedlumensegmentationusingmultiframeconvolutionalneuralnetworksinintravascularultrasounddatasets AT garciagarciahectorm automatedlumensegmentationusingmultiframeconvolutionalneuralnetworksinintravascularultrasounddatasets AT blancopabloj automatedlumensegmentationusingmultiframeconvolutionalneuralnetworksinintravascularultrasounddatasets |