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Systematic pan-cancer analysis showed that RAD51AP1 was associated with immune microenvironment, tumor stemness, and prognosis

Although RAD51 associated protein 1 (RAD51AP1) is crucial in genome stability maintenance, it also promotes cancer development with an unclear mechanism. In this study, we collected intact expression data of RAD51AP1 from the public database, and verified it was significantly over-expressed in 33 ca...

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Autores principales: Liu, Renwang, Zhu, Guangsheng, Li, Mingbiao, Cao, Peijun, Li, Xuanguang, Zhang, Xiuwen, Huang, Hua, Song, Zuoqing, Chen, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9708706/
https://www.ncbi.nlm.nih.gov/pubmed/36468013
http://dx.doi.org/10.3389/fgene.2022.971033
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author Liu, Renwang
Zhu, Guangsheng
Li, Mingbiao
Cao, Peijun
Li, Xuanguang
Zhang, Xiuwen
Huang, Hua
Song, Zuoqing
Chen, Jun
author_facet Liu, Renwang
Zhu, Guangsheng
Li, Mingbiao
Cao, Peijun
Li, Xuanguang
Zhang, Xiuwen
Huang, Hua
Song, Zuoqing
Chen, Jun
author_sort Liu, Renwang
collection PubMed
description Although RAD51 associated protein 1 (RAD51AP1) is crucial in genome stability maintenance, it also promotes cancer development with an unclear mechanism. In this study, we collected intact expression data of RAD51AP1 from the public database, and verified it was significantly over-expressed in 33 cancer types and correlated with poor prognosis in 13 cancer types, including glioma, adrenocortical carcinoma, lung adenocarcinoma. We further authenticated that RAD51AP1 is up-regulated in several typical cancer cell lines and promotes cancer cell proliferation in vitro. Moreover, we also demonstrated that RAD51AP1 was significantly positively related to cancer stemness score mRNAsi in 27 cancer types and broadly correlated to tumor-infiltrating immune cells in various cancers in a diverse manner. It was also negatively associated with immunophenoscore (IPS) and Estimation of STromal and Immune cells in MAlignant Tumours using Expression data (ESTIMATE) scores and positively correlated with mutant-allele tumor heterogeneity (MATH), tumor mutational burden (TMB), microsatellite instability (MSI), and PD-L1 expression in multiple cancers. The tumor stemness enhancing and tumor immune microenvironment affecting functions of RAD51AP1 might compose its carcinogenesis mechanism. Further investigations beyond the bioinformatics level should confirm these findings in each specific cancer.
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spelling pubmed-97087062022-12-01 Systematic pan-cancer analysis showed that RAD51AP1 was associated with immune microenvironment, tumor stemness, and prognosis Liu, Renwang Zhu, Guangsheng Li, Mingbiao Cao, Peijun Li, Xuanguang Zhang, Xiuwen Huang, Hua Song, Zuoqing Chen, Jun Front Genet Genetics Although RAD51 associated protein 1 (RAD51AP1) is crucial in genome stability maintenance, it also promotes cancer development with an unclear mechanism. In this study, we collected intact expression data of RAD51AP1 from the public database, and verified it was significantly over-expressed in 33 cancer types and correlated with poor prognosis in 13 cancer types, including glioma, adrenocortical carcinoma, lung adenocarcinoma. We further authenticated that RAD51AP1 is up-regulated in several typical cancer cell lines and promotes cancer cell proliferation in vitro. Moreover, we also demonstrated that RAD51AP1 was significantly positively related to cancer stemness score mRNAsi in 27 cancer types and broadly correlated to tumor-infiltrating immune cells in various cancers in a diverse manner. It was also negatively associated with immunophenoscore (IPS) and Estimation of STromal and Immune cells in MAlignant Tumours using Expression data (ESTIMATE) scores and positively correlated with mutant-allele tumor heterogeneity (MATH), tumor mutational burden (TMB), microsatellite instability (MSI), and PD-L1 expression in multiple cancers. The tumor stemness enhancing and tumor immune microenvironment affecting functions of RAD51AP1 might compose its carcinogenesis mechanism. Further investigations beyond the bioinformatics level should confirm these findings in each specific cancer. Frontiers Media S.A. 2022-11-16 /pmc/articles/PMC9708706/ /pubmed/36468013 http://dx.doi.org/10.3389/fgene.2022.971033 Text en Copyright © 2022 Liu, Zhu, Li, Cao, Li, Zhang, Huang, Song and Chen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Liu, Renwang
Zhu, Guangsheng
Li, Mingbiao
Cao, Peijun
Li, Xuanguang
Zhang, Xiuwen
Huang, Hua
Song, Zuoqing
Chen, Jun
Systematic pan-cancer analysis showed that RAD51AP1 was associated with immune microenvironment, tumor stemness, and prognosis
title Systematic pan-cancer analysis showed that RAD51AP1 was associated with immune microenvironment, tumor stemness, and prognosis
title_full Systematic pan-cancer analysis showed that RAD51AP1 was associated with immune microenvironment, tumor stemness, and prognosis
title_fullStr Systematic pan-cancer analysis showed that RAD51AP1 was associated with immune microenvironment, tumor stemness, and prognosis
title_full_unstemmed Systematic pan-cancer analysis showed that RAD51AP1 was associated with immune microenvironment, tumor stemness, and prognosis
title_short Systematic pan-cancer analysis showed that RAD51AP1 was associated with immune microenvironment, tumor stemness, and prognosis
title_sort systematic pan-cancer analysis showed that rad51ap1 was associated with immune microenvironment, tumor stemness, and prognosis
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9708706/
https://www.ncbi.nlm.nih.gov/pubmed/36468013
http://dx.doi.org/10.3389/fgene.2022.971033
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