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Reference Genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), A Keystone Fish Predator in Kelp Forest Ecosystems
Keystone species are known to play a critical role in kelp forest health, including the well-known killer whales, sea otter, sea urchin, kelp trophic cascade in the Aleutian Islands, Alaska, USA. In California, a major player in the regulation of sea urchin abundance, and in turn, the health of kelp...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9709978/ https://www.ncbi.nlm.nih.gov/pubmed/35778264 http://dx.doi.org/10.1093/jhered/esac032 |
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author | Bernardi, Giacomo DeBiasse, Melissa Escalona, Merly Marimuthu, Mohan P A Nguyen, Oanh Sacco, Samuel Beraut, Eric Miller, Courtney Toffelmier, Erin Shaffer, H Bradley |
author_facet | Bernardi, Giacomo DeBiasse, Melissa Escalona, Merly Marimuthu, Mohan P A Nguyen, Oanh Sacco, Samuel Beraut, Eric Miller, Courtney Toffelmier, Erin Shaffer, H Bradley |
author_sort | Bernardi, Giacomo |
collection | PubMed |
description | Keystone species are known to play a critical role in kelp forest health, including the well-known killer whales, sea otter, sea urchin, kelp trophic cascade in the Aleutian Islands, Alaska, USA. In California, a major player in the regulation of sea urchin abundance, and in turn, the health of kelp forests ecosystems, is a large wrasse, the California Sheephead, Semicossyphus pulcher. We present a reference genome for this ecologically important species that will serve as a key resource for future conservation research of California’s inshore marine environment utilizing genomic tools to address changes in life-history traits, dispersal, range shifts, and ecological interactions among members of the kelp forest ecological assemblages. Our genome assembly of S. pulcher has a total length of 0.794 Gb, which is similar to many other marine fishes. The assembly is largely contiguous (N50 = 31.9 Mb) and nearly complete (BUSCO single-copy core gene content = 98.1%). Within the context of the California Conservation Genomics Project (CCGP), the genome of S. pulcher will be used as an important reference resource for ongoing whole genome resequencing efforts of the species. |
format | Online Article Text |
id | pubmed-9709978 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-97099782022-12-01 Reference Genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), A Keystone Fish Predator in Kelp Forest Ecosystems Bernardi, Giacomo DeBiasse, Melissa Escalona, Merly Marimuthu, Mohan P A Nguyen, Oanh Sacco, Samuel Beraut, Eric Miller, Courtney Toffelmier, Erin Shaffer, H Bradley J Hered Genome Resources Keystone species are known to play a critical role in kelp forest health, including the well-known killer whales, sea otter, sea urchin, kelp trophic cascade in the Aleutian Islands, Alaska, USA. In California, a major player in the regulation of sea urchin abundance, and in turn, the health of kelp forests ecosystems, is a large wrasse, the California Sheephead, Semicossyphus pulcher. We present a reference genome for this ecologically important species that will serve as a key resource for future conservation research of California’s inshore marine environment utilizing genomic tools to address changes in life-history traits, dispersal, range shifts, and ecological interactions among members of the kelp forest ecological assemblages. Our genome assembly of S. pulcher has a total length of 0.794 Gb, which is similar to many other marine fishes. The assembly is largely contiguous (N50 = 31.9 Mb) and nearly complete (BUSCO single-copy core gene content = 98.1%). Within the context of the California Conservation Genomics Project (CCGP), the genome of S. pulcher will be used as an important reference resource for ongoing whole genome resequencing efforts of the species. Oxford University Press 2022-07-02 /pmc/articles/PMC9709978/ /pubmed/35778264 http://dx.doi.org/10.1093/jhered/esac032 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of The American Genetic Association. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Genome Resources Bernardi, Giacomo DeBiasse, Melissa Escalona, Merly Marimuthu, Mohan P A Nguyen, Oanh Sacco, Samuel Beraut, Eric Miller, Courtney Toffelmier, Erin Shaffer, H Bradley Reference Genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), A Keystone Fish Predator in Kelp Forest Ecosystems |
title | Reference Genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), A Keystone Fish Predator in Kelp Forest Ecosystems |
title_full | Reference Genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), A Keystone Fish Predator in Kelp Forest Ecosystems |
title_fullStr | Reference Genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), A Keystone Fish Predator in Kelp Forest Ecosystems |
title_full_unstemmed | Reference Genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), A Keystone Fish Predator in Kelp Forest Ecosystems |
title_short | Reference Genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), A Keystone Fish Predator in Kelp Forest Ecosystems |
title_sort | reference genome of the california sheephead, semicossyphus pulcher (labridae, perciformes), a keystone fish predator in kelp forest ecosystems |
topic | Genome Resources |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9709978/ https://www.ncbi.nlm.nih.gov/pubmed/35778264 http://dx.doi.org/10.1093/jhered/esac032 |
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