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Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer
The California ribbed mussel, Mytilus californianus, is an ecosystem engineer crucial for the survival of many marine species inhabiting the intertidal zone of California. Here, we describe the first reference genome for M. californianus and compare it to previously published genomes from three othe...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710001/ https://www.ncbi.nlm.nih.gov/pubmed/35947871 http://dx.doi.org/10.1093/jhered/esac041 |
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author | Paggeot, Lisa X DeBiasse, Melissa B Escalona, Merly Fairbairn, Colin Marimuthu, Mohan P A Nguyen, Oanh Sahasrabudhe, Ruta Dawson, Michael N |
author_facet | Paggeot, Lisa X DeBiasse, Melissa B Escalona, Merly Fairbairn, Colin Marimuthu, Mohan P A Nguyen, Oanh Sahasrabudhe, Ruta Dawson, Michael N |
author_sort | Paggeot, Lisa X |
collection | PubMed |
description | The California ribbed mussel, Mytilus californianus, is an ecosystem engineer crucial for the survival of many marine species inhabiting the intertidal zone of California. Here, we describe the first reference genome for M. californianus and compare it to previously published genomes from three other Mytilus species: M. edulis, M. coruscus, and M. galloprovincialis. The M. californianus reference genome is 1.65 Gb in length, with N50 sequence length of 118 Mb, and an estimated 86.0% complete single copy genes. Compared with the other three Mytilus species, the M. californianus genome assembly is the longest, has the highest N50 value, and the highest percentage complete single copy genes. This high-quality genome assembly provides a foundation for population genetic analyses that will give insight into future conservation work along the coast of California. |
format | Online Article Text |
id | pubmed-9710001 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-97100012022-12-01 Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer Paggeot, Lisa X DeBiasse, Melissa B Escalona, Merly Fairbairn, Colin Marimuthu, Mohan P A Nguyen, Oanh Sahasrabudhe, Ruta Dawson, Michael N J Hered Genome Resources The California ribbed mussel, Mytilus californianus, is an ecosystem engineer crucial for the survival of many marine species inhabiting the intertidal zone of California. Here, we describe the first reference genome for M. californianus and compare it to previously published genomes from three other Mytilus species: M. edulis, M. coruscus, and M. galloprovincialis. The M. californianus reference genome is 1.65 Gb in length, with N50 sequence length of 118 Mb, and an estimated 86.0% complete single copy genes. Compared with the other three Mytilus species, the M. californianus genome assembly is the longest, has the highest N50 value, and the highest percentage complete single copy genes. This high-quality genome assembly provides a foundation for population genetic analyses that will give insight into future conservation work along the coast of California. Oxford University Press 2022-11-30 /pmc/articles/PMC9710001/ /pubmed/35947871 http://dx.doi.org/10.1093/jhered/esac041 Text en © The American Genetic Association. 2022. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Genome Resources Paggeot, Lisa X DeBiasse, Melissa B Escalona, Merly Fairbairn, Colin Marimuthu, Mohan P A Nguyen, Oanh Sahasrabudhe, Ruta Dawson, Michael N Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer |
title | Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer |
title_full | Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer |
title_fullStr | Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer |
title_full_unstemmed | Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer |
title_short | Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer |
title_sort | reference genome for the california ribbed mussel, mytilus californianus, an ecosystem engineer |
topic | Genome Resources |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710001/ https://www.ncbi.nlm.nih.gov/pubmed/35947871 http://dx.doi.org/10.1093/jhered/esac041 |
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