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Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer

The California ribbed mussel, Mytilus californianus, is an ecosystem engineer crucial for the survival of many marine species inhabiting the intertidal zone of California. Here, we describe the first reference genome for M. californianus and compare it to previously published genomes from three othe...

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Autores principales: Paggeot, Lisa X, DeBiasse, Melissa B, Escalona, Merly, Fairbairn, Colin, Marimuthu, Mohan P A, Nguyen, Oanh, Sahasrabudhe, Ruta, Dawson, Michael N
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710001/
https://www.ncbi.nlm.nih.gov/pubmed/35947871
http://dx.doi.org/10.1093/jhered/esac041
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author Paggeot, Lisa X
DeBiasse, Melissa B
Escalona, Merly
Fairbairn, Colin
Marimuthu, Mohan P A
Nguyen, Oanh
Sahasrabudhe, Ruta
Dawson, Michael N
author_facet Paggeot, Lisa X
DeBiasse, Melissa B
Escalona, Merly
Fairbairn, Colin
Marimuthu, Mohan P A
Nguyen, Oanh
Sahasrabudhe, Ruta
Dawson, Michael N
author_sort Paggeot, Lisa X
collection PubMed
description The California ribbed mussel, Mytilus californianus, is an ecosystem engineer crucial for the survival of many marine species inhabiting the intertidal zone of California. Here, we describe the first reference genome for M. californianus and compare it to previously published genomes from three other Mytilus species: M. edulis, M. coruscus, and M. galloprovincialis. The M. californianus reference genome is 1.65 Gb in length, with N50 sequence length of 118 Mb, and an estimated 86.0% complete single copy genes. Compared with the other three Mytilus species, the M. californianus genome assembly is the longest, has the highest N50 value, and the highest percentage complete single copy genes. This high-quality genome assembly provides a foundation for population genetic analyses that will give insight into future conservation work along the coast of California.
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spelling pubmed-97100012022-12-01 Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer Paggeot, Lisa X DeBiasse, Melissa B Escalona, Merly Fairbairn, Colin Marimuthu, Mohan P A Nguyen, Oanh Sahasrabudhe, Ruta Dawson, Michael N J Hered Genome Resources The California ribbed mussel, Mytilus californianus, is an ecosystem engineer crucial for the survival of many marine species inhabiting the intertidal zone of California. Here, we describe the first reference genome for M. californianus and compare it to previously published genomes from three other Mytilus species: M. edulis, M. coruscus, and M. galloprovincialis. The M. californianus reference genome is 1.65 Gb in length, with N50 sequence length of 118 Mb, and an estimated 86.0% complete single copy genes. Compared with the other three Mytilus species, the M. californianus genome assembly is the longest, has the highest N50 value, and the highest percentage complete single copy genes. This high-quality genome assembly provides a foundation for population genetic analyses that will give insight into future conservation work along the coast of California. Oxford University Press 2022-11-30 /pmc/articles/PMC9710001/ /pubmed/35947871 http://dx.doi.org/10.1093/jhered/esac041 Text en © The American Genetic Association. 2022. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Genome Resources
Paggeot, Lisa X
DeBiasse, Melissa B
Escalona, Merly
Fairbairn, Colin
Marimuthu, Mohan P A
Nguyen, Oanh
Sahasrabudhe, Ruta
Dawson, Michael N
Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer
title Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer
title_full Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer
title_fullStr Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer
title_full_unstemmed Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer
title_short Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer
title_sort reference genome for the california ribbed mussel, mytilus californianus, an ecosystem engineer
topic Genome Resources
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710001/
https://www.ncbi.nlm.nih.gov/pubmed/35947871
http://dx.doi.org/10.1093/jhered/esac041
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