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Sequencing and assembling bear genomes: the bare necessities

Unique genetic adaptations are present in bears of every species across the world. From (nearly) shutting down important organs during hibernation to preventing harm from lifestyles that could easily cause metabolic diseases in humans, bears may hold the answer to various human ailments. However, on...

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Autores principales: Willey, Courtney, Korstanje, Ron
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710173/
https://www.ncbi.nlm.nih.gov/pubmed/36451195
http://dx.doi.org/10.1186/s12983-022-00475-8
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author Willey, Courtney
Korstanje, Ron
author_facet Willey, Courtney
Korstanje, Ron
author_sort Willey, Courtney
collection PubMed
description Unique genetic adaptations are present in bears of every species across the world. From (nearly) shutting down important organs during hibernation to preventing harm from lifestyles that could easily cause metabolic diseases in humans, bears may hold the answer to various human ailments. However, only a few of these unique traits are currently being investigated at the molecular level, partly because of the lack of necessary tools. One of these tools is well-annotated genome assemblies from the different, extant bear species. These reference genomes are needed to allow us to identify differences in genetic variants, isoforms, gene expression, and genomic features such as transposons and identify those that are associated with biomedical-relevant traits. In this review we assess the current state of the genome assemblies of the eight different bear species, discuss current gaps, and the future benefits these reference genomes may have in informing human biomedical applications, while at the same time improving bear conservation efforts.
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spelling pubmed-97101732022-12-01 Sequencing and assembling bear genomes: the bare necessities Willey, Courtney Korstanje, Ron Front Zool Review Unique genetic adaptations are present in bears of every species across the world. From (nearly) shutting down important organs during hibernation to preventing harm from lifestyles that could easily cause metabolic diseases in humans, bears may hold the answer to various human ailments. However, only a few of these unique traits are currently being investigated at the molecular level, partly because of the lack of necessary tools. One of these tools is well-annotated genome assemblies from the different, extant bear species. These reference genomes are needed to allow us to identify differences in genetic variants, isoforms, gene expression, and genomic features such as transposons and identify those that are associated with biomedical-relevant traits. In this review we assess the current state of the genome assemblies of the eight different bear species, discuss current gaps, and the future benefits these reference genomes may have in informing human biomedical applications, while at the same time improving bear conservation efforts. BioMed Central 2022-11-30 /pmc/articles/PMC9710173/ /pubmed/36451195 http://dx.doi.org/10.1186/s12983-022-00475-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Review
Willey, Courtney
Korstanje, Ron
Sequencing and assembling bear genomes: the bare necessities
title Sequencing and assembling bear genomes: the bare necessities
title_full Sequencing and assembling bear genomes: the bare necessities
title_fullStr Sequencing and assembling bear genomes: the bare necessities
title_full_unstemmed Sequencing and assembling bear genomes: the bare necessities
title_short Sequencing and assembling bear genomes: the bare necessities
title_sort sequencing and assembling bear genomes: the bare necessities
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710173/
https://www.ncbi.nlm.nih.gov/pubmed/36451195
http://dx.doi.org/10.1186/s12983-022-00475-8
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