SEQEL: a tool for biological sequence manipulation in Emacs

SUMMARY: Sequences are arguably the most common biological data. An easy-to-use tool can greatly facilitate daily manipulation and analysis of biological sequences. Here, we present SEQEL, a tool providing a convenient environment for editing, formatting and rendering of DNA, RNA and protein sequenc...

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Detalles Bibliográficos
Autores principales: Xu, Zhenjiang Zech, Lu, Hui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Application Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710577/
https://www.ncbi.nlm.nih.gov/pubmed/36700085
http://dx.doi.org/10.1093/bioadv/vbab019
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author Xu, Zhenjiang Zech
Lu, Hui
author_facet Xu, Zhenjiang Zech
Lu, Hui
author_sort Xu, Zhenjiang Zech
collection PubMed
description SUMMARY: Sequences are arguably the most common biological data. An easy-to-use tool can greatly facilitate daily manipulation and analysis of biological sequences. Here, we present SEQEL, a tool providing a convenient environment for editing, formatting and rendering of DNA, RNA and protein sequences. This is accomplished by extending the commonly used text editor, Emacs, which is available for Windows, Linux and Mac OS. AVAILABILITY AND IMPLEMENTATION: The unit tested ELISP source code for seqel is freely available from https://github.com/rnaer/seqel along with documentation. CONTACT: zhenjiang.xu@gmail.com
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spelling pubmed-97105772023-01-24 SEQEL: a tool for biological sequence manipulation in Emacs Xu, Zhenjiang Zech Lu, Hui Bioinform Adv Application Note SUMMARY: Sequences are arguably the most common biological data. An easy-to-use tool can greatly facilitate daily manipulation and analysis of biological sequences. Here, we present SEQEL, a tool providing a convenient environment for editing, formatting and rendering of DNA, RNA and protein sequences. This is accomplished by extending the commonly used text editor, Emacs, which is available for Windows, Linux and Mac OS. AVAILABILITY AND IMPLEMENTATION: The unit tested ELISP source code for seqel is freely available from https://github.com/rnaer/seqel along with documentation. CONTACT: zhenjiang.xu@gmail.com Oxford University Press 2021-11-17 /pmc/articles/PMC9710577/ /pubmed/36700085 http://dx.doi.org/10.1093/bioadv/vbab019 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Application Note
Xu, Zhenjiang Zech
Lu, Hui
SEQEL: a tool for biological sequence manipulation in Emacs
title SEQEL: a tool for biological sequence manipulation in Emacs
title_full SEQEL: a tool for biological sequence manipulation in Emacs
title_fullStr SEQEL: a tool for biological sequence manipulation in Emacs
title_full_unstemmed SEQEL: a tool for biological sequence manipulation in Emacs
title_short SEQEL: a tool for biological sequence manipulation in Emacs
title_sort seqel: a tool for biological sequence manipulation in emacs
topic Application Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710577/
https://www.ncbi.nlm.nih.gov/pubmed/36700085
http://dx.doi.org/10.1093/bioadv/vbab019
work_keys_str_mv AT xuzhenjiangzech seqelatoolforbiologicalsequencemanipulationinemacs
AT luhui seqelatoolforbiologicalsequencemanipulationinemacs

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