Cargando…

Balanced Functional Module Detection in genomic data

MOTIVATION: High-dimensional genomic data can be analyzed to understand the effects of variables on a target variable such as a clinical outcome. For understanding the underlying biological mechanism affecting the target, it is important to discover the complete set of relevant variables. Thus varia...

Descripción completa

Detalles Bibliográficos
Autores principales:	Tritchler, David, Towle-Miller, Lorin M, Miecznikowski, Jeffrey C
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2021
Materias:	Original Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710612/ https://www.ncbi.nlm.nih.gov/pubmed/36700111 http://dx.doi.org/10.1093/bioadv/vbab018

Ejemplares similares

SuMO-Fil: Supervised multi-omic filtering prior to performing network analysis
por: Towle-Miller, Lorin M., et al.
Publicado: (2021)

MOSCATO: a supervised approach for analyzing multi-Omic single-Cell data
por: Towle-Miller, Lorin M., et al.
Publicado: (2022)

Feature Detection Techniques for Preprocessing Proteomic Data
por: Sellers, Kimberly F., et al.
Publicado: (2010)

Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
por: Zhu, Qianqian, et al.
Publicado: (2010)

Using a higher criticism statistic to detect modest effects in a genome-wide study of rheumatoid arthritis
por: Parkhomenko, Elena, et al.
Publicado: (2009)

Genome-wide sparse canonical correlation of gene expression with genotypes
por: Parkhomenko, Elena, et al.
Publicado: (2007)

Genomic Balance: Two Genomes Establishing Synchrony to Modulate Cellular Fate and Function
por: St. John, Justin C.
Publicado: (2019)

Error control variability in pathway-based microarray analysis
por: Gold, David L., et al.
Publicado: (2009)

Association of anesthesia type with prolonged postoperative intubation in neonates undergoing inguinal hernia repair
por: Lamoshi, Abdulraouf, et al.
Publicado: (2020)

Impact of normalization and filtering on linkage analysis of gene expression data
por: Beyene, Joseph, et al.
Publicado: (2007)

A comparison of imputation procedures and statistical tests for the analysis of two-dimensional electrophoresis data
por: Miecznikowski, Jeffrey C, et al.
Publicado: (2010)

Putative null distributions corresponding to tests of differential expression in the Golden Spike dataset are intensity dependent
por: Gaile, Daniel P, et al.
Publicado: (2007)

From small studies to precision medicine: prioritizing candidate biomarkers
por: Gaile, Daniel P, et al.
Publicado: (2013)

Inferring Balancing Selection From Genome-Scale Data
por: Bitarello, Bárbara D, et al.
Publicado: (2023)

Barriers to accessing public cancer genomic data
por: Learned, Katrina, et al.
Publicado: (2019)

Filtering Genes for Cluster and Network Analysis
por: Tritchler, David, et al.
Publicado: (2009)

A comparison of imputation procedures and statistical tests for the analysis of two-dimensional electrophoresis data
por: Miecznikowski, Jeffrey C, et al.
Publicado: (2011)

Comparative survival analysis of breast cancer microarray studies identifies important prognostic genetic pathways
por: Miecznikowski, Jeffrey C, et al.
Publicado: (2010)

Pathway-based analysis of a genome-wide case-control association study of rheumatoid arthritis
por: Beyene, Joseph, et al.
Publicado: (2009)

Cluster analysis of protein array results via similarity of Gene Ontology annotation
por: Wolting, Cheryl, et al.
Publicado: (2006)

Modeling longitudinal oral health status and pneumonia risk: secondary data analyses of an integrated dental-medical cohort
por: Berg, Richard L., et al.
Publicado: (2023)

Modeling genomic data with type attributes, balancing stability and maintainability
por: Busch, Norbert, et al.
Publicado: (2009)

Stress-response balance drives the evolution of a network module and its host genome
por: González, Caleb, et al.
Publicado: (2015)

436 Novel approach for tracking interdisciplinary research productivity using institutional databases
por: Bengert, Elizabeth, et al.
Publicado: (2023)

PtIr–WO(3) nanostructured alloy for electrocatalytic oxidation of ethylene glycol and ethanol
por: Murawska, Magdalena, et al.
Publicado: (2014)

Normative data for the Balance Tracking System modified Clinical Test of Sensory Integration and Balance protocol
por: Goble, Daniel J, et al.
Publicado: (2019)

A New Normalizing Algorithm for BAC CGH Arrays with Quality Control Metrics
por: Miecznikowski, Jeffrey C., et al.
Publicado: (2011)

Gene set analysis controlling for length bias in RNA-seq experiments
por: Ren, Xing, et al.
Publicado: (2017)

The Role of Extracellular Vesicles in Cancer: Cargo, Function, and Therapeutic Implications
por: Jabalee, James, et al.
Publicado: (2018)

Leveraging the genetic correlation between traits improves the detection of epistasis in genome-wide association studies
por: Stamp, Julian, et al.
Publicado: (2023)

Assessment of the Suitability of Elastomeric Bearings Modeling Using the Hyperelasticity and the Finite Element Method
por: Gajewski, Marcin Daniel, et al.
Publicado: (2021)

Comparison of information-theoretic to statistical methods for gene-gene interactions in the presence of genetic heterogeneity
por: Sucheston, Lara, et al.
Publicado: (2010)

Automated assessment of balance: A neural network approach based on large-scale balance function data
por: Wu, Jingsong, et al.
Publicado: (2022)

FUSIM: a software tool for simulating fusion transcripts
por: Bruno, Andrew E, et al.
Publicado: (2013)

Genomic Balance and Speciation
por: Birchler, James A, et al.
Publicado: (2019)

The feasibility of testing experimentally the dietary fat-breast cancer hypothesis.
por: Boyd, N. F., et al.
Publicado: (1990)

Analysis of interaction dynamics and rogue wave localization in modulation instability using data-driven dominant balance
por: Ermolaev, Andrei V., et al.
Publicado: (2023)

Identification of Risk Pathways and Functional Modules for Coronary Artery Disease Based on Genome-wide SNP Data
por: Zhao, Xiang, et al.
Publicado: (2016)

BetaScan2: Standardized Statistics to Detect Balancing Selection Utilizing Substitution Data
por: Siewert, Katherine M, et al.
Publicado: (2020)

The Influence of the Type of Electrolyte in the Modifying Solution on the Protective Properties of Vinyltrimethoysilane/Ethanol-Based Coatings Formed on Stainless Steel X20Cr13
por: Kucharczyk, Aleksandra, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_n6bgo4timqun4716jimtp59gb1