Cargando…
wTAM: a web server for annotation of weighted human microRNAs
: It is well-known that some microRNAs (miRNAs) are more important than the others for life, hinting the wide range of miRNA in essentiality or importance. Functional enrichment analysis is a quite pervasive method to dig out the underlying biological pathway for a given gene list and several tools...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710651/ https://www.ncbi.nlm.nih.gov/pubmed/36699401 http://dx.doi.org/10.1093/bioadv/vbab040 |
_version_ | 1784841412861231104 |
---|---|
author | Cui, Chunmei Fan, Rui Zhou, Yuan Cui, Qinghua |
author_facet | Cui, Chunmei Fan, Rui Zhou, Yuan Cui, Qinghua |
author_sort | Cui, Chunmei |
collection | PubMed |
description | : It is well-known that some microRNAs (miRNAs) are more important than the others for life, hinting the wide range of miRNA in essentiality or importance. Functional enrichment analysis is a quite pervasive method to dig out the underlying biological pathway for a given gene list and several tools of miRNA set enrichment analysis have been developed. However, all those tools treat each miRNA equally and neglect the importance score of miRNA itself, which could be an obstacle to seek more insightful biological processes for researchers. Here, we developed wTAM, a tool for annotation of weighted human miRNAs, introducing the miRNA importance scores into enrichment analysis. In addition, the annotation repository has been enlarged comparing to TAM. Finally, the case study demonstrated the availability and flexibility of wTAM. AVAILABILITY AND IMPLEMENTATION: wTAM is freely available at http://www.cuilab.cn/wtam/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics Advances online. |
format | Online Article Text |
id | pubmed-9710651 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-97106512023-01-24 wTAM: a web server for annotation of weighted human microRNAs Cui, Chunmei Fan, Rui Zhou, Yuan Cui, Qinghua Bioinform Adv Application Note : It is well-known that some microRNAs (miRNAs) are more important than the others for life, hinting the wide range of miRNA in essentiality or importance. Functional enrichment analysis is a quite pervasive method to dig out the underlying biological pathway for a given gene list and several tools of miRNA set enrichment analysis have been developed. However, all those tools treat each miRNA equally and neglect the importance score of miRNA itself, which could be an obstacle to seek more insightful biological processes for researchers. Here, we developed wTAM, a tool for annotation of weighted human miRNAs, introducing the miRNA importance scores into enrichment analysis. In addition, the annotation repository has been enlarged comparing to TAM. Finally, the case study demonstrated the availability and flexibility of wTAM. AVAILABILITY AND IMPLEMENTATION: wTAM is freely available at http://www.cuilab.cn/wtam/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics Advances online. Oxford University Press 2021-12-07 /pmc/articles/PMC9710651/ /pubmed/36699401 http://dx.doi.org/10.1093/bioadv/vbab040 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Application Note Cui, Chunmei Fan, Rui Zhou, Yuan Cui, Qinghua wTAM: a web server for annotation of weighted human microRNAs |
title | wTAM: a web server for annotation of weighted human microRNAs |
title_full | wTAM: a web server for annotation of weighted human microRNAs |
title_fullStr | wTAM: a web server for annotation of weighted human microRNAs |
title_full_unstemmed | wTAM: a web server for annotation of weighted human microRNAs |
title_short | wTAM: a web server for annotation of weighted human microRNAs |
title_sort | wtam: a web server for annotation of weighted human micrornas |
topic | Application Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710651/ https://www.ncbi.nlm.nih.gov/pubmed/36699401 http://dx.doi.org/10.1093/bioadv/vbab040 |
work_keys_str_mv | AT cuichunmei wtamawebserverforannotationofweightedhumanmicrornas AT fanrui wtamawebserverforannotationofweightedhumanmicrornas AT zhouyuan wtamawebserverforannotationofweightedhumanmicrornas AT cuiqinghua wtamawebserverforannotationofweightedhumanmicrornas |