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wTAM: a web server for annotation of weighted human microRNAs

 : It is well-known that some microRNAs (miRNAs) are more important than the others for life, hinting the wide range of miRNA in essentiality or importance. Functional enrichment analysis is a quite pervasive method to dig out the underlying biological pathway for a given gene list and several tools...

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Detalles Bibliográficos
Autores principales: Cui, Chunmei, Fan, Rui, Zhou, Yuan, Cui, Qinghua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710651/
https://www.ncbi.nlm.nih.gov/pubmed/36699401
http://dx.doi.org/10.1093/bioadv/vbab040
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author Cui, Chunmei
Fan, Rui
Zhou, Yuan
Cui, Qinghua
author_facet Cui, Chunmei
Fan, Rui
Zhou, Yuan
Cui, Qinghua
author_sort Cui, Chunmei
collection PubMed
description  : It is well-known that some microRNAs (miRNAs) are more important than the others for life, hinting the wide range of miRNA in essentiality or importance. Functional enrichment analysis is a quite pervasive method to dig out the underlying biological pathway for a given gene list and several tools of miRNA set enrichment analysis have been developed. However, all those tools treat each miRNA equally and neglect the importance score of miRNA itself, which could be an obstacle to seek more insightful biological processes for researchers. Here, we developed wTAM, a tool for annotation of weighted human miRNAs, introducing the miRNA importance scores into enrichment analysis. In addition, the annotation repository has been enlarged comparing to TAM. Finally, the case study demonstrated the availability and flexibility of wTAM. AVAILABILITY AND IMPLEMENTATION: wTAM is freely available at http://www.cuilab.cn/wtam/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics Advances online.
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spelling pubmed-97106512023-01-24 wTAM: a web server for annotation of weighted human microRNAs Cui, Chunmei Fan, Rui Zhou, Yuan Cui, Qinghua Bioinform Adv Application Note  : It is well-known that some microRNAs (miRNAs) are more important than the others for life, hinting the wide range of miRNA in essentiality or importance. Functional enrichment analysis is a quite pervasive method to dig out the underlying biological pathway for a given gene list and several tools of miRNA set enrichment analysis have been developed. However, all those tools treat each miRNA equally and neglect the importance score of miRNA itself, which could be an obstacle to seek more insightful biological processes for researchers. Here, we developed wTAM, a tool for annotation of weighted human miRNAs, introducing the miRNA importance scores into enrichment analysis. In addition, the annotation repository has been enlarged comparing to TAM. Finally, the case study demonstrated the availability and flexibility of wTAM. AVAILABILITY AND IMPLEMENTATION: wTAM is freely available at http://www.cuilab.cn/wtam/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics Advances online. Oxford University Press 2021-12-07 /pmc/articles/PMC9710651/ /pubmed/36699401 http://dx.doi.org/10.1093/bioadv/vbab040 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Application Note
Cui, Chunmei
Fan, Rui
Zhou, Yuan
Cui, Qinghua
wTAM: a web server for annotation of weighted human microRNAs
title wTAM: a web server for annotation of weighted human microRNAs
title_full wTAM: a web server for annotation of weighted human microRNAs
title_fullStr wTAM: a web server for annotation of weighted human microRNAs
title_full_unstemmed wTAM: a web server for annotation of weighted human microRNAs
title_short wTAM: a web server for annotation of weighted human microRNAs
title_sort wtam: a web server for annotation of weighted human micrornas
topic Application Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710651/
https://www.ncbi.nlm.nih.gov/pubmed/36699401
http://dx.doi.org/10.1093/bioadv/vbab040
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