Cutevariant: a standalone GUI-based desktop application to explore genetic variations from an annotated VCF file

SUMMARY: Cutevariant is a graphical user interface (GUI)-based desktop application designed to filter variations from annotated VCF file. The application imports data into a local SQLite database where complex filter queries can be built either from GUI controllers or using a domain-specific languag...

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Detalles Bibliográficos
Autores principales: Schutz, Sacha, Monod-Broca, Charles, Bourneuf, Lucas, Marijon, Pierre, Montier, Tristan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Application Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710699/
https://www.ncbi.nlm.nih.gov/pubmed/36699349
http://dx.doi.org/10.1093/bioadv/vbab028
Descripción
Sumario:SUMMARY: Cutevariant is a graphical user interface (GUI)-based desktop application designed to filter variations from annotated VCF file. The application imports data into a local SQLite database where complex filter queries can be built either from GUI controllers or using a domain-specific language called Variant Query Language. Cutevariant provides more features than existing applications and is fully customizable thanks to a complete plugins architecture. AVAILABILITY AND IMPLEMENTATION: Cutevariant is distributed as a multiplatform client-side software under an open source license and is available at https://github.com/labsquare/cutevariant.

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