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Role of androgen receptor signaling pathway-related lncRNAs in the prognosis and immune infiltration of breast cancer
Androgen receptor (AR) is strong association with breast cancer (BRCA). We aimed to investigate the effect of the androgen receptor signaling pathway-related long non-coding RNAs (ARSP-related lncRNAs) on the process of subtype classification and the tumor microenvironment (TME) of breast cancer (BR...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9712677/ https://www.ncbi.nlm.nih.gov/pubmed/36450882 http://dx.doi.org/10.1038/s41598-022-25231-0 |
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author | Huang, Guo Cao, Hong Liu, Guowen Chen, Juan |
author_facet | Huang, Guo Cao, Hong Liu, Guowen Chen, Juan |
author_sort | Huang, Guo |
collection | PubMed |
description | Androgen receptor (AR) is strong association with breast cancer (BRCA). We aimed to investigate the effect of the androgen receptor signaling pathway-related long non-coding RNAs (ARSP-related lncRNAs) on the process of subtype classification and the tumor microenvironment (TME) of breast cancer (BRCA). Our study screen ARSP-related lncRNAs for the construction of a risk model. The single-sample gene set enrichment analysis (ssGSEA) method was used to detect the differences between the immune responses generated by the patients belonging to the low- and high-risk groups. The relationship between the ARSP-related lncRNAs and TME was explored following the process of cluster analysis. The univariate Cox analysis and the Lasso regression analysis method was used to screen nine of these lncRNAs to develop a risk model. It was observed that risk score could function as an independent prognostic factor, affecting the prognoses of patients suffering from BRCA. The validity of the model was assessed by analyzing the generated calibration curves and a nomogram. Additionally, the effect of the risk score on the extent of immune cell infiltration realized in TME was explored. M2 macrophages correlated positively, whereas NK cells, CD4+ T cells, and naive B cells correlated negatively with the risk score. Results obtained using the cluster analysis indicated that immune scores correlated with clustered subtypes. Finally, the risk score and cluster subtypes were analyzed to study the sensitivity of the patients toward different drugs to identify the appropriate therapeutic agents. The prognoses of patients suffering from BRCA can be accurately predicted by ARSP-related lncRNAs. |
format | Online Article Text |
id | pubmed-9712677 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-97126772022-12-02 Role of androgen receptor signaling pathway-related lncRNAs in the prognosis and immune infiltration of breast cancer Huang, Guo Cao, Hong Liu, Guowen Chen, Juan Sci Rep Article Androgen receptor (AR) is strong association with breast cancer (BRCA). We aimed to investigate the effect of the androgen receptor signaling pathway-related long non-coding RNAs (ARSP-related lncRNAs) on the process of subtype classification and the tumor microenvironment (TME) of breast cancer (BRCA). Our study screen ARSP-related lncRNAs for the construction of a risk model. The single-sample gene set enrichment analysis (ssGSEA) method was used to detect the differences between the immune responses generated by the patients belonging to the low- and high-risk groups. The relationship between the ARSP-related lncRNAs and TME was explored following the process of cluster analysis. The univariate Cox analysis and the Lasso regression analysis method was used to screen nine of these lncRNAs to develop a risk model. It was observed that risk score could function as an independent prognostic factor, affecting the prognoses of patients suffering from BRCA. The validity of the model was assessed by analyzing the generated calibration curves and a nomogram. Additionally, the effect of the risk score on the extent of immune cell infiltration realized in TME was explored. M2 macrophages correlated positively, whereas NK cells, CD4+ T cells, and naive B cells correlated negatively with the risk score. Results obtained using the cluster analysis indicated that immune scores correlated with clustered subtypes. Finally, the risk score and cluster subtypes were analyzed to study the sensitivity of the patients toward different drugs to identify the appropriate therapeutic agents. The prognoses of patients suffering from BRCA can be accurately predicted by ARSP-related lncRNAs. Nature Publishing Group UK 2022-11-30 /pmc/articles/PMC9712677/ /pubmed/36450882 http://dx.doi.org/10.1038/s41598-022-25231-0 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Huang, Guo Cao, Hong Liu, Guowen Chen, Juan Role of androgen receptor signaling pathway-related lncRNAs in the prognosis and immune infiltration of breast cancer |
title | Role of androgen receptor signaling pathway-related lncRNAs in the prognosis and immune infiltration of breast cancer |
title_full | Role of androgen receptor signaling pathway-related lncRNAs in the prognosis and immune infiltration of breast cancer |
title_fullStr | Role of androgen receptor signaling pathway-related lncRNAs in the prognosis and immune infiltration of breast cancer |
title_full_unstemmed | Role of androgen receptor signaling pathway-related lncRNAs in the prognosis and immune infiltration of breast cancer |
title_short | Role of androgen receptor signaling pathway-related lncRNAs in the prognosis and immune infiltration of breast cancer |
title_sort | role of androgen receptor signaling pathway-related lncrnas in the prognosis and immune infiltration of breast cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9712677/ https://www.ncbi.nlm.nih.gov/pubmed/36450882 http://dx.doi.org/10.1038/s41598-022-25231-0 |
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