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Genome report: chromosome-level draft assemblies of the snow leopard, African leopard, and tiger (Panthera uncia, Panthera pardus pardus, and Panthera tigris)
The big cats (genus Panthera) represent some of the most popular and charismatic species on the planet. Although some reference genomes are available for this clade, few are at the chromosome level, inhibiting high-resolution genomic studies. We assembled genomes from 3 members of the genus, the tig...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9713438/ https://www.ncbi.nlm.nih.gov/pubmed/36250809 http://dx.doi.org/10.1093/g3journal/jkac277 |
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author | Armstrong, Ellie E Campana, Michael G Solari, Katherine A Morgan, Simon R Ryder, Oliver A Naude, Vincent N Samelius, Gustaf Sharma, Koustubh Hadly, Elizabeth A Petrov, Dmitri A |
author_facet | Armstrong, Ellie E Campana, Michael G Solari, Katherine A Morgan, Simon R Ryder, Oliver A Naude, Vincent N Samelius, Gustaf Sharma, Koustubh Hadly, Elizabeth A Petrov, Dmitri A |
author_sort | Armstrong, Ellie E |
collection | PubMed |
description | The big cats (genus Panthera) represent some of the most popular and charismatic species on the planet. Although some reference genomes are available for this clade, few are at the chromosome level, inhibiting high-resolution genomic studies. We assembled genomes from 3 members of the genus, the tiger (Panthera tigris), the snow leopard (Panthera uncia), and the African leopard (Panthera pardus pardus), at chromosome or near-chromosome level. We used a combination of short- and long-read technologies, as well as proximity ligation data from Hi-C technology, to achieve high continuity and contiguity for each individual. We hope that these genomes will aid in further evolutionary and conservation research of this iconic group of mammals. |
format | Online Article Text |
id | pubmed-9713438 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-97134382022-12-02 Genome report: chromosome-level draft assemblies of the snow leopard, African leopard, and tiger (Panthera uncia, Panthera pardus pardus, and Panthera tigris) Armstrong, Ellie E Campana, Michael G Solari, Katherine A Morgan, Simon R Ryder, Oliver A Naude, Vincent N Samelius, Gustaf Sharma, Koustubh Hadly, Elizabeth A Petrov, Dmitri A G3 (Bethesda) Genome Report The big cats (genus Panthera) represent some of the most popular and charismatic species on the planet. Although some reference genomes are available for this clade, few are at the chromosome level, inhibiting high-resolution genomic studies. We assembled genomes from 3 members of the genus, the tiger (Panthera tigris), the snow leopard (Panthera uncia), and the African leopard (Panthera pardus pardus), at chromosome or near-chromosome level. We used a combination of short- and long-read technologies, as well as proximity ligation data from Hi-C technology, to achieve high continuity and contiguity for each individual. We hope that these genomes will aid in further evolutionary and conservation research of this iconic group of mammals. Oxford University Press 2022-10-17 /pmc/articles/PMC9713438/ /pubmed/36250809 http://dx.doi.org/10.1093/g3journal/jkac277 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genome Report Armstrong, Ellie E Campana, Michael G Solari, Katherine A Morgan, Simon R Ryder, Oliver A Naude, Vincent N Samelius, Gustaf Sharma, Koustubh Hadly, Elizabeth A Petrov, Dmitri A Genome report: chromosome-level draft assemblies of the snow leopard, African leopard, and tiger (Panthera uncia, Panthera pardus pardus, and Panthera tigris) |
title | Genome report: chromosome-level draft assemblies of the snow leopard, African leopard, and tiger (Panthera uncia, Panthera pardus pardus, and Panthera tigris) |
title_full | Genome report: chromosome-level draft assemblies of the snow leopard, African leopard, and tiger (Panthera uncia, Panthera pardus pardus, and Panthera tigris) |
title_fullStr | Genome report: chromosome-level draft assemblies of the snow leopard, African leopard, and tiger (Panthera uncia, Panthera pardus pardus, and Panthera tigris) |
title_full_unstemmed | Genome report: chromosome-level draft assemblies of the snow leopard, African leopard, and tiger (Panthera uncia, Panthera pardus pardus, and Panthera tigris) |
title_short | Genome report: chromosome-level draft assemblies of the snow leopard, African leopard, and tiger (Panthera uncia, Panthera pardus pardus, and Panthera tigris) |
title_sort | genome report: chromosome-level draft assemblies of the snow leopard, african leopard, and tiger (panthera uncia, panthera pardus pardus, and panthera tigris) |
topic | Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9713438/ https://www.ncbi.nlm.nih.gov/pubmed/36250809 http://dx.doi.org/10.1093/g3journal/jkac277 |
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