Cargando…

Bond dissociation energies of X–H bonds in proteins

Knowledge of reliable X–H bond dissociation energies (X = C, N, O, S) for amino acids in proteins is key for studying the radical chemistry of proteins. X–H bond dissociation energies of model dipeptides were computed using the isodesmic reaction method at the BMK/6-31+G(2df,p) and G4(MP2)-6X levels...

Descripción completa

Detalles Bibliográficos
Autores principales: Treyde, Wojtek, Riedmiller, Kai, Gräter, Frauke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9713614/
https://www.ncbi.nlm.nih.gov/pubmed/36545577
http://dx.doi.org/10.1039/d2ra04002f
_version_ 1784842049875345408
author Treyde, Wojtek
Riedmiller, Kai
Gräter, Frauke
author_facet Treyde, Wojtek
Riedmiller, Kai
Gräter, Frauke
author_sort Treyde, Wojtek
collection PubMed
description Knowledge of reliable X–H bond dissociation energies (X = C, N, O, S) for amino acids in proteins is key for studying the radical chemistry of proteins. X–H bond dissociation energies of model dipeptides were computed using the isodesmic reaction method at the BMK/6-31+G(2df,p) and G4(MP2)-6X levels of theory. The density functional theory values agree well with the composite-level calculations. By this high level of theory, combined with a careful choice of reference compounds and peptide model systems, our work provides a highly valuable data set of bond dissociation energies with unprecedented accuracy and comprehensiveness. It will likely prove useful to predict protein biochemistry involving radicals, e.g., by machine learning.
format Online
Article
Text
id pubmed-9713614
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher The Royal Society of Chemistry
record_format MEDLINE/PubMed
spelling pubmed-97136142022-12-20 Bond dissociation energies of X–H bonds in proteins Treyde, Wojtek Riedmiller, Kai Gräter, Frauke RSC Adv Chemistry Knowledge of reliable X–H bond dissociation energies (X = C, N, O, S) for amino acids in proteins is key for studying the radical chemistry of proteins. X–H bond dissociation energies of model dipeptides were computed using the isodesmic reaction method at the BMK/6-31+G(2df,p) and G4(MP2)-6X levels of theory. The density functional theory values agree well with the composite-level calculations. By this high level of theory, combined with a careful choice of reference compounds and peptide model systems, our work provides a highly valuable data set of bond dissociation energies with unprecedented accuracy and comprehensiveness. It will likely prove useful to predict protein biochemistry involving radicals, e.g., by machine learning. The Royal Society of Chemistry 2022-12-01 /pmc/articles/PMC9713614/ /pubmed/36545577 http://dx.doi.org/10.1039/d2ra04002f Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/
spellingShingle Chemistry
Treyde, Wojtek
Riedmiller, Kai
Gräter, Frauke
Bond dissociation energies of X–H bonds in proteins
title Bond dissociation energies of X–H bonds in proteins
title_full Bond dissociation energies of X–H bonds in proteins
title_fullStr Bond dissociation energies of X–H bonds in proteins
title_full_unstemmed Bond dissociation energies of X–H bonds in proteins
title_short Bond dissociation energies of X–H bonds in proteins
title_sort bond dissociation energies of x–h bonds in proteins
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9713614/
https://www.ncbi.nlm.nih.gov/pubmed/36545577
http://dx.doi.org/10.1039/d2ra04002f
work_keys_str_mv AT treydewojtek bonddissociationenergiesofxhbondsinproteins
AT riedmillerkai bonddissociationenergiesofxhbondsinproteins
AT graterfrauke bonddissociationenergiesofxhbondsinproteins