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Bond dissociation energies of X–H bonds in proteins
Knowledge of reliable X–H bond dissociation energies (X = C, N, O, S) for amino acids in proteins is key for studying the radical chemistry of proteins. X–H bond dissociation energies of model dipeptides were computed using the isodesmic reaction method at the BMK/6-31+G(2df,p) and G4(MP2)-6X levels...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9713614/ https://www.ncbi.nlm.nih.gov/pubmed/36545577 http://dx.doi.org/10.1039/d2ra04002f |
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author | Treyde, Wojtek Riedmiller, Kai Gräter, Frauke |
author_facet | Treyde, Wojtek Riedmiller, Kai Gräter, Frauke |
author_sort | Treyde, Wojtek |
collection | PubMed |
description | Knowledge of reliable X–H bond dissociation energies (X = C, N, O, S) for amino acids in proteins is key for studying the radical chemistry of proteins. X–H bond dissociation energies of model dipeptides were computed using the isodesmic reaction method at the BMK/6-31+G(2df,p) and G4(MP2)-6X levels of theory. The density functional theory values agree well with the composite-level calculations. By this high level of theory, combined with a careful choice of reference compounds and peptide model systems, our work provides a highly valuable data set of bond dissociation energies with unprecedented accuracy and comprehensiveness. It will likely prove useful to predict protein biochemistry involving radicals, e.g., by machine learning. |
format | Online Article Text |
id | pubmed-9713614 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-97136142022-12-20 Bond dissociation energies of X–H bonds in proteins Treyde, Wojtek Riedmiller, Kai Gräter, Frauke RSC Adv Chemistry Knowledge of reliable X–H bond dissociation energies (X = C, N, O, S) for amino acids in proteins is key for studying the radical chemistry of proteins. X–H bond dissociation energies of model dipeptides were computed using the isodesmic reaction method at the BMK/6-31+G(2df,p) and G4(MP2)-6X levels of theory. The density functional theory values agree well with the composite-level calculations. By this high level of theory, combined with a careful choice of reference compounds and peptide model systems, our work provides a highly valuable data set of bond dissociation energies with unprecedented accuracy and comprehensiveness. It will likely prove useful to predict protein biochemistry involving radicals, e.g., by machine learning. The Royal Society of Chemistry 2022-12-01 /pmc/articles/PMC9713614/ /pubmed/36545577 http://dx.doi.org/10.1039/d2ra04002f Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/ |
spellingShingle | Chemistry Treyde, Wojtek Riedmiller, Kai Gräter, Frauke Bond dissociation energies of X–H bonds in proteins |
title | Bond dissociation energies of X–H bonds in proteins |
title_full | Bond dissociation energies of X–H bonds in proteins |
title_fullStr | Bond dissociation energies of X–H bonds in proteins |
title_full_unstemmed | Bond dissociation energies of X–H bonds in proteins |
title_short | Bond dissociation energies of X–H bonds in proteins |
title_sort | bond dissociation energies of x–h bonds in proteins |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9713614/ https://www.ncbi.nlm.nih.gov/pubmed/36545577 http://dx.doi.org/10.1039/d2ra04002f |
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