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Automated Detection of Bowel Preparation Scoring and Adequacy With Deep Convolutional Neural Networks
INTRODUCTION: Adequate bowel preparation is integral to effective colonoscopy. Inadequate bowel preparation has been associated with reduced adenoma detection rate and increased post-colonoscopy colorectal cancer (PCCRC). As a result, the USMSTF recommends early interval reevaluation for colonoscopi...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9713630/ https://www.ncbi.nlm.nih.gov/pubmed/36467599 http://dx.doi.org/10.1093/jcag/gwac013 |
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author | Low, Daniel J Hong, Zhuoqiao Jugnundan, Sechiv Mukherjee, Anjishnu Grover, Samir C |
author_facet | Low, Daniel J Hong, Zhuoqiao Jugnundan, Sechiv Mukherjee, Anjishnu Grover, Samir C |
author_sort | Low, Daniel J |
collection | PubMed |
description | INTRODUCTION: Adequate bowel preparation is integral to effective colonoscopy. Inadequate bowel preparation has been associated with reduced adenoma detection rate and increased post-colonoscopy colorectal cancer (PCCRC). As a result, the USMSTF recommends early interval reevaluation for colonoscopies with inadequate bowel preparation. However, bowel preparation documentation is highly variable with subjective interpretation. In this study, we developed deep convolutional neural networks (DCNN) to objectively ascertain bowel preparation. METHODS: Bowel preparation scores were assigned using the Boston Bowel Preparation Scale (BBPS). Bowel preparation adequacy and inadequacy were defined as BBPS ≥2 and BBPS <2, respectively. A total of 38523 images were extracted from 28 colonoscopy videos and split into 26966 images for training, 7704 for validation, and 3853 for testing. Two DCNNs were created using a Densenet-169 backbone in PyTorch library evaluating BBPS score and bowel preparation adequacy. We used Adam optimiser with an initial learning rate of 3 × 10(−4) and a scheduler to decay the learning rate of each parameter group by 0.1 every 7 epochs along with focal loss as our criterion for both classifiers. RESULTS: The overall accuracy for BBPS subclassification and determination of adequacy was 91% and 98%, respectively. The accuracy for BBPS 0, BBPS 1, BBPS 2, and BBPS 3 was 84%, 91%, 85%, and 96%, respectively. CONCLUSION: We developed DCCNs capable of assessing bowel preparation adequacy and scoring with a high degree of accuracy. However, this algorithm will require further research to assess its efficacy in real-time colonoscopy. |
format | Online Article Text |
id | pubmed-9713630 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-97136302022-12-02 Automated Detection of Bowel Preparation Scoring and Adequacy With Deep Convolutional Neural Networks Low, Daniel J Hong, Zhuoqiao Jugnundan, Sechiv Mukherjee, Anjishnu Grover, Samir C J Can Assoc Gastroenterol Original Articles INTRODUCTION: Adequate bowel preparation is integral to effective colonoscopy. Inadequate bowel preparation has been associated with reduced adenoma detection rate and increased post-colonoscopy colorectal cancer (PCCRC). As a result, the USMSTF recommends early interval reevaluation for colonoscopies with inadequate bowel preparation. However, bowel preparation documentation is highly variable with subjective interpretation. In this study, we developed deep convolutional neural networks (DCNN) to objectively ascertain bowel preparation. METHODS: Bowel preparation scores were assigned using the Boston Bowel Preparation Scale (BBPS). Bowel preparation adequacy and inadequacy were defined as BBPS ≥2 and BBPS <2, respectively. A total of 38523 images were extracted from 28 colonoscopy videos and split into 26966 images for training, 7704 for validation, and 3853 for testing. Two DCNNs were created using a Densenet-169 backbone in PyTorch library evaluating BBPS score and bowel preparation adequacy. We used Adam optimiser with an initial learning rate of 3 × 10(−4) and a scheduler to decay the learning rate of each parameter group by 0.1 every 7 epochs along with focal loss as our criterion for both classifiers. RESULTS: The overall accuracy for BBPS subclassification and determination of adequacy was 91% and 98%, respectively. The accuracy for BBPS 0, BBPS 1, BBPS 2, and BBPS 3 was 84%, 91%, 85%, and 96%, respectively. CONCLUSION: We developed DCCNs capable of assessing bowel preparation adequacy and scoring with a high degree of accuracy. However, this algorithm will require further research to assess its efficacy in real-time colonoscopy. Oxford University Press 2022-04-16 /pmc/articles/PMC9713630/ /pubmed/36467599 http://dx.doi.org/10.1093/jcag/gwac013 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of the Canadian Association of Gastroenterology. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Low, Daniel J Hong, Zhuoqiao Jugnundan, Sechiv Mukherjee, Anjishnu Grover, Samir C Automated Detection of Bowel Preparation Scoring and Adequacy With Deep Convolutional Neural Networks |
title | Automated Detection of Bowel Preparation Scoring and Adequacy With Deep Convolutional Neural Networks |
title_full | Automated Detection of Bowel Preparation Scoring and Adequacy With Deep Convolutional Neural Networks |
title_fullStr | Automated Detection of Bowel Preparation Scoring and Adequacy With Deep Convolutional Neural Networks |
title_full_unstemmed | Automated Detection of Bowel Preparation Scoring and Adequacy With Deep Convolutional Neural Networks |
title_short | Automated Detection of Bowel Preparation Scoring and Adequacy With Deep Convolutional Neural Networks |
title_sort | automated detection of bowel preparation scoring and adequacy with deep convolutional neural networks |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9713630/ https://www.ncbi.nlm.nih.gov/pubmed/36467599 http://dx.doi.org/10.1093/jcag/gwac013 |
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