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OAF: a new member of the BRICHOS family
SUMMARY: The 10 known BRICHOS domain-containing proteins in humans have been linked to an unusually long list of pathologies, including cancer, obesity and two amyloid-like diseases. BRICHOS domains themselves have been described as intramolecular chaperones that act to prevent amyloid-like aggregat...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9714404/ https://www.ncbi.nlm.nih.gov/pubmed/36699367 http://dx.doi.org/10.1093/bioadv/vbac087 |
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author | Sanchez-Pulido, Luis Ponting, Chris P |
author_facet | Sanchez-Pulido, Luis Ponting, Chris P |
author_sort | Sanchez-Pulido, Luis |
collection | PubMed |
description | SUMMARY: The 10 known BRICHOS domain-containing proteins in humans have been linked to an unusually long list of pathologies, including cancer, obesity and two amyloid-like diseases. BRICHOS domains themselves have been described as intramolecular chaperones that act to prevent amyloid-like aggregation of their proteins' mature polypeptides. Using structural comparison of coevolution-based AlphaFold models and sequence conservation, we identified the Out at First (OAF) protein as a new member of the BRICHOS family in humans. OAF is an experimentally uncharacterized protein that has been proposed as a candidate biomarker for clinical management of coronavirus disease 2019 infections. Our analysis revealed how structural comparison of AlphaFold models can discover remote homology relationships and lead to a better understanding of BRICHOS domain molecular mechanism. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics Advances online. |
format | Online Article Text |
id | pubmed-9714404 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-97144042023-01-24 OAF: a new member of the BRICHOS family Sanchez-Pulido, Luis Ponting, Chris P Bioinform Adv Discovery Note SUMMARY: The 10 known BRICHOS domain-containing proteins in humans have been linked to an unusually long list of pathologies, including cancer, obesity and two amyloid-like diseases. BRICHOS domains themselves have been described as intramolecular chaperones that act to prevent amyloid-like aggregation of their proteins' mature polypeptides. Using structural comparison of coevolution-based AlphaFold models and sequence conservation, we identified the Out at First (OAF) protein as a new member of the BRICHOS family in humans. OAF is an experimentally uncharacterized protein that has been proposed as a candidate biomarker for clinical management of coronavirus disease 2019 infections. Our analysis revealed how structural comparison of AlphaFold models can discover remote homology relationships and lead to a better understanding of BRICHOS domain molecular mechanism. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics Advances online. Oxford University Press 2022-11-24 /pmc/articles/PMC9714404/ /pubmed/36699367 http://dx.doi.org/10.1093/bioadv/vbac087 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Discovery Note Sanchez-Pulido, Luis Ponting, Chris P OAF: a new member of the BRICHOS family |
title | OAF: a new member of the BRICHOS family |
title_full | OAF: a new member of the BRICHOS family |
title_fullStr | OAF: a new member of the BRICHOS family |
title_full_unstemmed | OAF: a new member of the BRICHOS family |
title_short | OAF: a new member of the BRICHOS family |
title_sort | oaf: a new member of the brichos family |
topic | Discovery Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9714404/ https://www.ncbi.nlm.nih.gov/pubmed/36699367 http://dx.doi.org/10.1093/bioadv/vbac087 |
work_keys_str_mv | AT sanchezpulidoluis oafanewmemberofthebrichosfamily AT pontingchrisp oafanewmemberofthebrichosfamily |