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A non-destructive testing method for early detection of ginseng root diseases using machine learning technologies based on leaf hyperspectral reflectance

Ginseng is an important medicinal plant benefiting human health for thousands of years. Root disease is the main cause of ginseng yield loss. It is difficult to detect ginseng root disease by manual observation on the changes of leaves, as it takes a long time until symptoms appear on leaves after t...

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Autores principales: Zhao, Guiping, Pei, Yifei, Yang, Ruoqi, Xiang, Li, Fang, Zihan, Wang, Ye, Yin, Dou, Wu, Jie, Gao, Dan, Yu, Dade, Li, Xiwen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9714554/
https://www.ncbi.nlm.nih.gov/pubmed/36466253
http://dx.doi.org/10.3389/fpls.2022.1031030
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author Zhao, Guiping
Pei, Yifei
Yang, Ruoqi
Xiang, Li
Fang, Zihan
Wang, Ye
Yin, Dou
Wu, Jie
Gao, Dan
Yu, Dade
Li, Xiwen
author_facet Zhao, Guiping
Pei, Yifei
Yang, Ruoqi
Xiang, Li
Fang, Zihan
Wang, Ye
Yin, Dou
Wu, Jie
Gao, Dan
Yu, Dade
Li, Xiwen
author_sort Zhao, Guiping
collection PubMed
description Ginseng is an important medicinal plant benefiting human health for thousands of years. Root disease is the main cause of ginseng yield loss. It is difficult to detect ginseng root disease by manual observation on the changes of leaves, as it takes a long time until symptoms appear on leaves after the infection on roots. In order to detect root diseases at early stages and limit their further spread, an efficient and non-destructive testing (NDT) method is urgently needed. Hyperspectral remote sensing technology was performed in this study to discern whether ginseng roots were diseased. Hyperspectral reflectance of leaves at 325-1,075 nm were collected from the ginsengs with no symptoms on leaves at visual. These spectra were divided into healthy and diseased groups according to the symptoms on roots after harvest. The hyperspectral data were used to construct machine learning classification models including random forest, extreme random tree (ET), adaptive boosting and gradient boosting decision tree respectively to identify diseased ginsengs, while calculating the vegetation indices and analyzing the region of specific spectral bands. The precision rates of the ET model preprocessed by savitzky golay method for the identification of healthy and diseased ginsengs reached 99% and 98%, respectively. Combined with the preliminary analysis of band importance, vegetation indices and physiological characteristics, 690-726 nm was screened out as a specific band for early detection of ginseng root diseases. Therefore, underground root diseases can be effectively detected at an early stage by leaf hyperspectral reflectance. The NDT method for early detection of ginsengs root diseases is proposed in this study. The method is helpful in the prevention and control of root diseases of ginsengs to prevent the reduction of ginseng yield.
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spelling pubmed-97145542022-12-02 A non-destructive testing method for early detection of ginseng root diseases using machine learning technologies based on leaf hyperspectral reflectance Zhao, Guiping Pei, Yifei Yang, Ruoqi Xiang, Li Fang, Zihan Wang, Ye Yin, Dou Wu, Jie Gao, Dan Yu, Dade Li, Xiwen Front Plant Sci Plant Science Ginseng is an important medicinal plant benefiting human health for thousands of years. Root disease is the main cause of ginseng yield loss. It is difficult to detect ginseng root disease by manual observation on the changes of leaves, as it takes a long time until symptoms appear on leaves after the infection on roots. In order to detect root diseases at early stages and limit their further spread, an efficient and non-destructive testing (NDT) method is urgently needed. Hyperspectral remote sensing technology was performed in this study to discern whether ginseng roots were diseased. Hyperspectral reflectance of leaves at 325-1,075 nm were collected from the ginsengs with no symptoms on leaves at visual. These spectra were divided into healthy and diseased groups according to the symptoms on roots after harvest. The hyperspectral data were used to construct machine learning classification models including random forest, extreme random tree (ET), adaptive boosting and gradient boosting decision tree respectively to identify diseased ginsengs, while calculating the vegetation indices and analyzing the region of specific spectral bands. The precision rates of the ET model preprocessed by savitzky golay method for the identification of healthy and diseased ginsengs reached 99% and 98%, respectively. Combined with the preliminary analysis of band importance, vegetation indices and physiological characteristics, 690-726 nm was screened out as a specific band for early detection of ginseng root diseases. Therefore, underground root diseases can be effectively detected at an early stage by leaf hyperspectral reflectance. The NDT method for early detection of ginsengs root diseases is proposed in this study. The method is helpful in the prevention and control of root diseases of ginsengs to prevent the reduction of ginseng yield. Frontiers Media S.A. 2022-11-17 /pmc/articles/PMC9714554/ /pubmed/36466253 http://dx.doi.org/10.3389/fpls.2022.1031030 Text en Copyright © 2022 Zhao, Pei, Yang, Xiang, Fang, Wang, Yin, Wu, Gao, Yu and Li https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Zhao, Guiping
Pei, Yifei
Yang, Ruoqi
Xiang, Li
Fang, Zihan
Wang, Ye
Yin, Dou
Wu, Jie
Gao, Dan
Yu, Dade
Li, Xiwen
A non-destructive testing method for early detection of ginseng root diseases using machine learning technologies based on leaf hyperspectral reflectance
title A non-destructive testing method for early detection of ginseng root diseases using machine learning technologies based on leaf hyperspectral reflectance
title_full A non-destructive testing method for early detection of ginseng root diseases using machine learning technologies based on leaf hyperspectral reflectance
title_fullStr A non-destructive testing method for early detection of ginseng root diseases using machine learning technologies based on leaf hyperspectral reflectance
title_full_unstemmed A non-destructive testing method for early detection of ginseng root diseases using machine learning technologies based on leaf hyperspectral reflectance
title_short A non-destructive testing method for early detection of ginseng root diseases using machine learning technologies based on leaf hyperspectral reflectance
title_sort non-destructive testing method for early detection of ginseng root diseases using machine learning technologies based on leaf hyperspectral reflectance
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9714554/
https://www.ncbi.nlm.nih.gov/pubmed/36466253
http://dx.doi.org/10.3389/fpls.2022.1031030
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