Cargando…

Improved NGS-based detection of microsatellite instability using tumor-only data

Microsatellite instability (MSI) is a molecular signature of mismatch repair deficiency (dMMR), a predictive marker of immune checkpoint inhibitor therapy response. Despite its recognized pan-cancer value, most methods only support detection of this signature in colorectal cancer. In addition to the...

Descripción completa

Detalles Bibliográficos
Autores principales:	Marques, Ana Claudia, Ferraro-Peyret, Carole, Michaud, Frederic, Song, Lin, Smith, Ewan, Fabre, Guillaume, Willig, Adrian, Wong, Melissa M. L., Xing, Xiaobin, Chong, Chloe, Brayer, Marion, Fenouil, Tanguy, Hervieu, Valérie, Bancel, Brigitte, Devouassoux, Mojgan, Balme, Brigitte, Meyronet, David, Menu, Philippe, Lopez, Jonathan, Xu, Zhenyu
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2022
Materias:	Oncology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9714634/ https://www.ncbi.nlm.nih.gov/pubmed/36465367 http://dx.doi.org/10.3389/fonc.2022.969238

Ejemplares similares

Intracranial non-myxoid angiomatoid fibrous histiocytoma with EWSR1-CREB1 transcript fusion treated with doxorubicin: A case report
por: Garnier, Louis, et al.
Publicado: (2021)

Cross-platform comparison for the detection of RAS mutations in cfDNA (ddPCR Biorad detection assay, BEAMing assay, and NGS strategy)
por: Garcia, Jessica, et al.
Publicado: (2018)

KIT Mutation and Loss of 14q May Be Sufficient for the Development of Clinically Symptomatic Very Low-Risk GIST
por: Klinke, Olaf Karl, et al.
Publicado: (2015)

Detecting Microsatellite Instability in Endometrial, Colon, and Stomach Cancers Using Targeted NGS
por: Boyarskikh, Ulyana, et al.
Publicado: (2023)

Microsatellite Status Detection in Gastrointestinal Cancers: PCR/NGS Is Mandatory in Negative/Patchy MMR Immunohistochemistry
por: Zito Marino, Federica, et al.
Publicado: (2022)

Necrobiosis lipoidica of the breast associated with Crohn’s disease: a case report
por: Kelati, Awatef, et al.
Publicado: (2023)

Species identification and comparative population genetics of four coastal houndsharks based on novel NGS‐mined microsatellites
por: Maduna, Simo N., et al.
Publicado: (2017)

MEM: An Algorithm for the Reliable Detection of Microsatellite Instability (MSI) on a Small NGS Panel in Colorectal Cancer
por: Herbreteau, Guillaume, et al.
Publicado: (2021)

Concordance in detection of microsatellite instability by PCR and NGS in routinely processed tumor specimens of several cancer types
por: Bartels, Stephan, et al.
Publicado: (2023)

Identification and Characterization of Microsatellite Loci in Maqui (Aristotelia chilensis [Molina] Stunz) Using Next-Generation Sequencing (NGS)
por: Bastías, Adriana, et al.
Publicado: (2016)

A novel NGS-based microsatellite instability (MSI) status classifier with 9 loci for colorectal cancer patients
por: Zheng, Kai, et al.
Publicado: (2020)

NGS-based identification and tracing of microsatellite instability from minute amounts DNA using inter-Alu-PCR
por: Yu, Fangyan, et al.
Publicado: (2020)

Forensic Implications of the Discrepancies Caused between NGS and CE Results by New Microvariant Allele at Penta E Microsatellite
por: Kocsis, Balázs, et al.
Publicado: (2023)

Pathobiology of ovarian carcinomas
por: Devouassoux-Shisheboran, Mojgan, et al.
Publicado: (2015)

The polymorphism of Hydra microsatellite sequences provides strain-specific signatures
por: Schenkelaars, Quentin, et al.
Publicado: (2020)

Fast and Cost-Effective Mining of Microsatellite Markers Using NGS Technology: An Example of a Korean Water Deer Hydropotes inermis argyropus
por: Yu, Jeong-Nam, et al.
Publicado: (2011)

A Strategy to Setup Codominant Microsatellite Analysis for High-Resolution-Melting-Curve-Analysis (HRM)
por: Mader, Eduard, et al.
Publicado: (2008)

snoRNAs Offer Novel Insight and Promising Perspectives for Lung Cancer Understanding and Management
por: Mourksi, Nour-El-Houda, et al.
Publicado: (2020)

Addendum to the NGS report
por: CERN. Geneva. SPS-PS Experiments Committee
Publicado: (1999)

Preliminary Information of Iranian Lizard Leishmania Promastigote Transcriptome Sequencing by Next Generation Sequencing (NGS) Method
por: Ehya, Farveh, et al.
Publicado: (2023)

Recommendations for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples
por: Kubik, Slawomir, et al.
Publicado: (2021)

NGS-Logistics: federated analysis of NGS sequence variants across multiple locations
por: Ardeshirdavani, Amin, et al.
Publicado: (2014)

CSI NGS Portal: An Online Platform for Automated NGS Data Analysis and Sharing
por: An, Omer, et al.
Publicado: (2020)

ngsComposer: an automated pipeline for empirically based NGS data quality filtering
por: Kuster, Ryan D, et al.
Publicado: (2021)

Remission of a long-lasting sarcoidosis after allogeneic hematopoietic stem cell transplantation for acute myeloid leukemia
por: Ginoux, Emmanuelle, et al.
Publicado: (2016)

Not Only Why but Also How to Trust Science: Reshaping Science Education Based on Science Studies for a Better Post-pandemic World
por: Lima, Nathan Willig, et al.
Publicado: (2022)

NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL
por: May, Ali, et al.
Publicado: (2015)

The ICR142 NGS validation series: a resource for orthogonal assessment of NGS analysis
por: Ruark, Elise, et al.
Publicado: (2018)

NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis
por: Singer, Jochen, et al.
Publicado: (2018)

Systematic detection of mosaicism by using digital NGS reveals three new MEN1 mosaicisms
por: Lagarde, Arnaud, et al.
Publicado: (2022)

Progress on NGS beam studies
por: CERN. Geneva. SPS-PS Experiments Committee
Publicado: (1998)

NGS for Metabolic Disease Diagnosis
por: Yubero, Dèlia, et al.
Publicado: (2018)

NGS in the clinical microbiology settings
por: Pitashny, Milena, et al.
Publicado: (2022)

Skin tests may induce DRESS relapse
por: Said, Benoit Ben, et al.
Publicado: (2014)

Nail apparatus melanoma initially diagnosed as nail matrix blue nevus: a case report with dermatoscopy and dermatopathology
por: Akay, Bengu Nisa, et al.
Publicado: (2017)

Improvement of cell freezing technologies: towards a fully closed process
por: Polès-Lahille, Aurore, et al.
Publicado: (2011)

NGS-Logistics: data infrastructure for efficient analysis of NGS sequence variants across multiple centers
por: Ardeshirdavani, Amin, et al.
Publicado: (2015)

Significance of Primary Melanoma Regression on Local Infiltrate and Outcome
por: Kelati, Awatef, et al.
Publicado: (2022)

Integrated analysis highlights APC11 protein expression as a likely new independent predictive marker for colorectal cancer
por: Drouet, Youenn, et al.
Publicado: (2018)

NGS-Integrator: An efficient tool for combining multiple NGS data tracks using minimum Bayes’ factors
por: Wen, Bronte, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_q6v9s6638lsfjrcibjl4s51ra7