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TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models

Reference anatomies of the brain (‘templates’) and corresponding atlases are the foundation for reporting standardized neuroimaging results. Currently, there is no registry of templates and atlases; therefore, the redistribution of these resources occurs either bundled within existing software or in...

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Autores principales: Ciric, Rastko, Thompson, William H., Lorenz, Romy, Goncalves, Mathias, MacNicol, Eilidh E., Markiewicz, Christopher J., Halchenko, Yaroslav O., Ghosh, Satrajit S., Gorgolewski, Krzysztof J., Poldrack, Russell A., Esteban, Oscar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group US 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9718663/
https://www.ncbi.nlm.nih.gov/pubmed/36456786
http://dx.doi.org/10.1038/s41592-022-01681-2
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author Ciric, Rastko
Thompson, William H.
Lorenz, Romy
Goncalves, Mathias
MacNicol, Eilidh E.
Markiewicz, Christopher J.
Halchenko, Yaroslav O.
Ghosh, Satrajit S.
Gorgolewski, Krzysztof J.
Poldrack, Russell A.
Esteban, Oscar
author_facet Ciric, Rastko
Thompson, William H.
Lorenz, Romy
Goncalves, Mathias
MacNicol, Eilidh E.
Markiewicz, Christopher J.
Halchenko, Yaroslav O.
Ghosh, Satrajit S.
Gorgolewski, Krzysztof J.
Poldrack, Russell A.
Esteban, Oscar
author_sort Ciric, Rastko
collection PubMed
description Reference anatomies of the brain (‘templates’) and corresponding atlases are the foundation for reporting standardized neuroimaging results. Currently, there is no registry of templates and atlases; therefore, the redistribution of these resources occurs either bundled within existing software or in ad hoc ways such as downloads from institutional sites and general-purpose data repositories. We introduce TemplateFlow as a publicly available framework for human and non-human brain models. The framework combines an open database with software for access, management, and vetting, allowing scientists to share their resources under FAIR—findable, accessible, interoperable, and reusable—principles. TemplateFlow enables multifaceted insights into brains across species, and supports multiverse analyses testing whether results generalize across standard references, scales, and in the long term, species.
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spelling pubmed-97186632022-12-04 TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models Ciric, Rastko Thompson, William H. Lorenz, Romy Goncalves, Mathias MacNicol, Eilidh E. Markiewicz, Christopher J. Halchenko, Yaroslav O. Ghosh, Satrajit S. Gorgolewski, Krzysztof J. Poldrack, Russell A. Esteban, Oscar Nat Methods Brief Communication Reference anatomies of the brain (‘templates’) and corresponding atlases are the foundation for reporting standardized neuroimaging results. Currently, there is no registry of templates and atlases; therefore, the redistribution of these resources occurs either bundled within existing software or in ad hoc ways such as downloads from institutional sites and general-purpose data repositories. We introduce TemplateFlow as a publicly available framework for human and non-human brain models. The framework combines an open database with software for access, management, and vetting, allowing scientists to share their resources under FAIR—findable, accessible, interoperable, and reusable—principles. TemplateFlow enables multifaceted insights into brains across species, and supports multiverse analyses testing whether results generalize across standard references, scales, and in the long term, species. Nature Publishing Group US 2022-12-01 2022 /pmc/articles/PMC9718663/ /pubmed/36456786 http://dx.doi.org/10.1038/s41592-022-01681-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Brief Communication
Ciric, Rastko
Thompson, William H.
Lorenz, Romy
Goncalves, Mathias
MacNicol, Eilidh E.
Markiewicz, Christopher J.
Halchenko, Yaroslav O.
Ghosh, Satrajit S.
Gorgolewski, Krzysztof J.
Poldrack, Russell A.
Esteban, Oscar
TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models
title TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models
title_full TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models
title_fullStr TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models
title_full_unstemmed TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models
title_short TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models
title_sort templateflow: fair-sharing of multi-scale, multi-species brain models
topic Brief Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9718663/
https://www.ncbi.nlm.nih.gov/pubmed/36456786
http://dx.doi.org/10.1038/s41592-022-01681-2
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