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TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models
Reference anatomies of the brain (‘templates’) and corresponding atlases are the foundation for reporting standardized neuroimaging results. Currently, there is no registry of templates and atlases; therefore, the redistribution of these resources occurs either bundled within existing software or in...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group US
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9718663/ https://www.ncbi.nlm.nih.gov/pubmed/36456786 http://dx.doi.org/10.1038/s41592-022-01681-2 |
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author | Ciric, Rastko Thompson, William H. Lorenz, Romy Goncalves, Mathias MacNicol, Eilidh E. Markiewicz, Christopher J. Halchenko, Yaroslav O. Ghosh, Satrajit S. Gorgolewski, Krzysztof J. Poldrack, Russell A. Esteban, Oscar |
author_facet | Ciric, Rastko Thompson, William H. Lorenz, Romy Goncalves, Mathias MacNicol, Eilidh E. Markiewicz, Christopher J. Halchenko, Yaroslav O. Ghosh, Satrajit S. Gorgolewski, Krzysztof J. Poldrack, Russell A. Esteban, Oscar |
author_sort | Ciric, Rastko |
collection | PubMed |
description | Reference anatomies of the brain (‘templates’) and corresponding atlases are the foundation for reporting standardized neuroimaging results. Currently, there is no registry of templates and atlases; therefore, the redistribution of these resources occurs either bundled within existing software or in ad hoc ways such as downloads from institutional sites and general-purpose data repositories. We introduce TemplateFlow as a publicly available framework for human and non-human brain models. The framework combines an open database with software for access, management, and vetting, allowing scientists to share their resources under FAIR—findable, accessible, interoperable, and reusable—principles. TemplateFlow enables multifaceted insights into brains across species, and supports multiverse analyses testing whether results generalize across standard references, scales, and in the long term, species. |
format | Online Article Text |
id | pubmed-9718663 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group US |
record_format | MEDLINE/PubMed |
spelling | pubmed-97186632022-12-04 TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models Ciric, Rastko Thompson, William H. Lorenz, Romy Goncalves, Mathias MacNicol, Eilidh E. Markiewicz, Christopher J. Halchenko, Yaroslav O. Ghosh, Satrajit S. Gorgolewski, Krzysztof J. Poldrack, Russell A. Esteban, Oscar Nat Methods Brief Communication Reference anatomies of the brain (‘templates’) and corresponding atlases are the foundation for reporting standardized neuroimaging results. Currently, there is no registry of templates and atlases; therefore, the redistribution of these resources occurs either bundled within existing software or in ad hoc ways such as downloads from institutional sites and general-purpose data repositories. We introduce TemplateFlow as a publicly available framework for human and non-human brain models. The framework combines an open database with software for access, management, and vetting, allowing scientists to share their resources under FAIR—findable, accessible, interoperable, and reusable—principles. TemplateFlow enables multifaceted insights into brains across species, and supports multiverse analyses testing whether results generalize across standard references, scales, and in the long term, species. Nature Publishing Group US 2022-12-01 2022 /pmc/articles/PMC9718663/ /pubmed/36456786 http://dx.doi.org/10.1038/s41592-022-01681-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Brief Communication Ciric, Rastko Thompson, William H. Lorenz, Romy Goncalves, Mathias MacNicol, Eilidh E. Markiewicz, Christopher J. Halchenko, Yaroslav O. Ghosh, Satrajit S. Gorgolewski, Krzysztof J. Poldrack, Russell A. Esteban, Oscar TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models |
title | TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models |
title_full | TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models |
title_fullStr | TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models |
title_full_unstemmed | TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models |
title_short | TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models |
title_sort | templateflow: fair-sharing of multi-scale, multi-species brain models |
topic | Brief Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9718663/ https://www.ncbi.nlm.nih.gov/pubmed/36456786 http://dx.doi.org/10.1038/s41592-022-01681-2 |
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