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Exploration of the cancer genome atlas database reveals genes of interest related with cancer cell stemness indices in clear cell renal cell carcinoma

Heterogeneity of kidney cancer poses great challenges in clinical management. Practicians are still in need of an effective way to identify high-risk patients. Here we browsed big data from The Cancer Genome Atlas database with reference to cancer cell stemness and identified genes of interest in cl...

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Detalles Bibliográficos
Autores principales: Xing, Siwei, Ruan, Xiaohao, Zhang, Chuanjie, Xu, Danfeng, Chen, Lu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9719011/
https://www.ncbi.nlm.nih.gov/pubmed/36471843
http://dx.doi.org/10.1016/j.heliyon.2022.e11794
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author Xing, Siwei
Ruan, Xiaohao
Zhang, Chuanjie
Xu, Danfeng
Chen, Lu
author_facet Xing, Siwei
Ruan, Xiaohao
Zhang, Chuanjie
Xu, Danfeng
Chen, Lu
author_sort Xing, Siwei
collection PubMed
description Heterogeneity of kidney cancer poses great challenges in clinical management. Practicians are still in need of an effective way to identify high-risk patients. Here we browsed big data from The Cancer Genome Atlas database with reference to cancer cell stemness and identified genes of interest in clear cell renal cell carcinoma. We further analyzed these genes to uncover their role in cancer promotion and progression and presented an interaction network. The results highlighted the NOTCH signaling pathway and functions related with epithelial cell migration. Finally, we managed to construct a predictive model consisting of a reasonable number of genes that successfully recognized patients at higher risk, rendering these genes suitable as subjects in future research.
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spelling pubmed-97190112022-12-04 Exploration of the cancer genome atlas database reveals genes of interest related with cancer cell stemness indices in clear cell renal cell carcinoma Xing, Siwei Ruan, Xiaohao Zhang, Chuanjie Xu, Danfeng Chen, Lu Heliyon Research Article Heterogeneity of kidney cancer poses great challenges in clinical management. Practicians are still in need of an effective way to identify high-risk patients. Here we browsed big data from The Cancer Genome Atlas database with reference to cancer cell stemness and identified genes of interest in clear cell renal cell carcinoma. We further analyzed these genes to uncover their role in cancer promotion and progression and presented an interaction network. The results highlighted the NOTCH signaling pathway and functions related with epithelial cell migration. Finally, we managed to construct a predictive model consisting of a reasonable number of genes that successfully recognized patients at higher risk, rendering these genes suitable as subjects in future research. Elsevier 2022-11-23 /pmc/articles/PMC9719011/ /pubmed/36471843 http://dx.doi.org/10.1016/j.heliyon.2022.e11794 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Xing, Siwei
Ruan, Xiaohao
Zhang, Chuanjie
Xu, Danfeng
Chen, Lu
Exploration of the cancer genome atlas database reveals genes of interest related with cancer cell stemness indices in clear cell renal cell carcinoma
title Exploration of the cancer genome atlas database reveals genes of interest related with cancer cell stemness indices in clear cell renal cell carcinoma
title_full Exploration of the cancer genome atlas database reveals genes of interest related with cancer cell stemness indices in clear cell renal cell carcinoma
title_fullStr Exploration of the cancer genome atlas database reveals genes of interest related with cancer cell stemness indices in clear cell renal cell carcinoma
title_full_unstemmed Exploration of the cancer genome atlas database reveals genes of interest related with cancer cell stemness indices in clear cell renal cell carcinoma
title_short Exploration of the cancer genome atlas database reveals genes of interest related with cancer cell stemness indices in clear cell renal cell carcinoma
title_sort exploration of the cancer genome atlas database reveals genes of interest related with cancer cell stemness indices in clear cell renal cell carcinoma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9719011/
https://www.ncbi.nlm.nih.gov/pubmed/36471843
http://dx.doi.org/10.1016/j.heliyon.2022.e11794
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