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NGS-based targeted gene mutational profiles in Korean patients with pancreatic cancer

According to molecular profiling studies, a considerable number of patients with pancreatic cancer harbor potentially actionable mutations. However, there are limited relevant data from the Korean population. We assessed the molecular profiles of patients with pancreatic cancer in Korea. This study...

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Autores principales: Jung, Kwangrok, Lee, Sejoon, Na, Hee Young, Kim, Ji-Won, Lee, Jong-Chan, Hwang, Jin-Hyeok, Kim, Jin Won, Kim, Jaihwan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9719465/
https://www.ncbi.nlm.nih.gov/pubmed/36463295
http://dx.doi.org/10.1038/s41598-022-24732-2
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author Jung, Kwangrok
Lee, Sejoon
Na, Hee Young
Kim, Ji-Won
Lee, Jong-Chan
Hwang, Jin-Hyeok
Kim, Jin Won
Kim, Jaihwan
author_facet Jung, Kwangrok
Lee, Sejoon
Na, Hee Young
Kim, Ji-Won
Lee, Jong-Chan
Hwang, Jin-Hyeok
Kim, Jin Won
Kim, Jaihwan
author_sort Jung, Kwangrok
collection PubMed
description According to molecular profiling studies, a considerable number of patients with pancreatic cancer harbor potentially actionable mutations. However, there are limited relevant data from the Korean population. We assessed the molecular profiles of patients with pancreatic cancer in Korea. This study collected molecular profiling data from patients with pancreatic cancer who visited Seoul National University Bundang Hospital between March 2018 and August 2020. Formalin-fixed, paraffin-embedded tumor specimens were sequenced using a targeted next-generation sequencing (NGS) platform. Cancer-associated mutations were analyzed, and potentially actionable mutations were identified. Potentially actionable mutations were classified into “highly actionable” and “modifies options” based on the Know Your Tumor registry study. In total, 87 patients with NGS tumor panel data were identified. Sixty-one patients (70.1%) had metastatic disease at the time of tissue acquisition. Tissues were obtained from the primary tumors and metastatic sites in 41 (47.1%) and 46 (52.9%) patients, respectively. At least one pathogenic mutation was reported in 86 patients (98.9%). The frequencies of four common mutations in our cohort were similar to those in The Cancer Genome Atlas data. Potentially actionable mutations were identified in 27 patients (31.0%). Of these, mutations categorized as highly actionable and modifies options were identified in 12 (13.8%) and 18 patients (20.7%), respectively. The most frequent highly actionable mutations were located in DNA damage response genes, such as BRCA1, BRCA2, or ATM (n = 6, 6.9%). Two patients with germline BRCA1 mutations received maintenance poly(adenosine diphosphate-ribose) polymerase inhibitor therapy. One patient has been receiving maintenance treatment for 18 months while remaining in radiologically complete remission. Mutational profiles using targeted NGS in Korean patients with pancreatic cancer were similar to those in Western patients. The present study supports the clinical potential and possible expanded clinical use of genetic profiling.
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spelling pubmed-97194652022-12-05 NGS-based targeted gene mutational profiles in Korean patients with pancreatic cancer Jung, Kwangrok Lee, Sejoon Na, Hee Young Kim, Ji-Won Lee, Jong-Chan Hwang, Jin-Hyeok Kim, Jin Won Kim, Jaihwan Sci Rep Article According to molecular profiling studies, a considerable number of patients with pancreatic cancer harbor potentially actionable mutations. However, there are limited relevant data from the Korean population. We assessed the molecular profiles of patients with pancreatic cancer in Korea. This study collected molecular profiling data from patients with pancreatic cancer who visited Seoul National University Bundang Hospital between March 2018 and August 2020. Formalin-fixed, paraffin-embedded tumor specimens were sequenced using a targeted next-generation sequencing (NGS) platform. Cancer-associated mutations were analyzed, and potentially actionable mutations were identified. Potentially actionable mutations were classified into “highly actionable” and “modifies options” based on the Know Your Tumor registry study. In total, 87 patients with NGS tumor panel data were identified. Sixty-one patients (70.1%) had metastatic disease at the time of tissue acquisition. Tissues were obtained from the primary tumors and metastatic sites in 41 (47.1%) and 46 (52.9%) patients, respectively. At least one pathogenic mutation was reported in 86 patients (98.9%). The frequencies of four common mutations in our cohort were similar to those in The Cancer Genome Atlas data. Potentially actionable mutations were identified in 27 patients (31.0%). Of these, mutations categorized as highly actionable and modifies options were identified in 12 (13.8%) and 18 patients (20.7%), respectively. The most frequent highly actionable mutations were located in DNA damage response genes, such as BRCA1, BRCA2, or ATM (n = 6, 6.9%). Two patients with germline BRCA1 mutations received maintenance poly(adenosine diphosphate-ribose) polymerase inhibitor therapy. One patient has been receiving maintenance treatment for 18 months while remaining in radiologically complete remission. Mutational profiles using targeted NGS in Korean patients with pancreatic cancer were similar to those in Western patients. The present study supports the clinical potential and possible expanded clinical use of genetic profiling. Nature Publishing Group UK 2022-12-03 /pmc/articles/PMC9719465/ /pubmed/36463295 http://dx.doi.org/10.1038/s41598-022-24732-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Jung, Kwangrok
Lee, Sejoon
Na, Hee Young
Kim, Ji-Won
Lee, Jong-Chan
Hwang, Jin-Hyeok
Kim, Jin Won
Kim, Jaihwan
NGS-based targeted gene mutational profiles in Korean patients with pancreatic cancer
title NGS-based targeted gene mutational profiles in Korean patients with pancreatic cancer
title_full NGS-based targeted gene mutational profiles in Korean patients with pancreatic cancer
title_fullStr NGS-based targeted gene mutational profiles in Korean patients with pancreatic cancer
title_full_unstemmed NGS-based targeted gene mutational profiles in Korean patients with pancreatic cancer
title_short NGS-based targeted gene mutational profiles in Korean patients with pancreatic cancer
title_sort ngs-based targeted gene mutational profiles in korean patients with pancreatic cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9719465/
https://www.ncbi.nlm.nih.gov/pubmed/36463295
http://dx.doi.org/10.1038/s41598-022-24732-2
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