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SF-MVPA: A from raw data to statistical results and surface space-based MVPA toolbox
Compared with traditional volume space-based multivariate pattern analysis (MVPA), surface space-based MVPA has many advantages and has received increasing attention. However, surface space-based MVPA requires considerable programming and is therefore difficult for people without a programming found...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9720187/ https://www.ncbi.nlm.nih.gov/pubmed/36478878 http://dx.doi.org/10.3389/fnins.2022.1046752 |
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author | Li, Qiang Gong, Dinghong Shen, Jie Rao, Chang Ni, Lei Zhang, Hongyi |
author_facet | Li, Qiang Gong, Dinghong Shen, Jie Rao, Chang Ni, Lei Zhang, Hongyi |
author_sort | Li, Qiang |
collection | PubMed |
description | Compared with traditional volume space-based multivariate pattern analysis (MVPA), surface space-based MVPA has many advantages and has received increasing attention. However, surface space-based MVPA requires considerable programming and is therefore difficult for people without a programming foundation. To address this, we developed a MATLAB toolbox based on a graphical interactive interface (GUI) called surface space-based multivariate pattern analysis (SF-MVPA) in this manuscript. Unlike the traditional MVPA toolboxes, which often only include MVPA calculation processes after data preprocessing, SF-MVPA covers the complete pipeline of surface space-based MVPA, including raw data format conversion, surface reconstruction, functional magnetic resonance (fMRI) data preprocessing, comparative analysis, surface space-based MVPA, leave one-run out cross validation, and family-wise error correction. With SF-MVPA, users can complete the complete pipeline of surface space-based MVPA without programming. In addition, SF-MVPA is designed for parallel computing and hence has high computational efficiency. After introducing SF-MVPA, we analyzed a sample dataset of tonal working memory load. By comparison with another surface space-based MVPA toolbox named CoSMoMVPA, we found that the two toolboxes obtained consistent results. We hope that through this toolbox, users can more easily implement surface space-based MVPA. |
format | Online Article Text |
id | pubmed-9720187 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97201872022-12-06 SF-MVPA: A from raw data to statistical results and surface space-based MVPA toolbox Li, Qiang Gong, Dinghong Shen, Jie Rao, Chang Ni, Lei Zhang, Hongyi Front Neurosci Neuroscience Compared with traditional volume space-based multivariate pattern analysis (MVPA), surface space-based MVPA has many advantages and has received increasing attention. However, surface space-based MVPA requires considerable programming and is therefore difficult for people without a programming foundation. To address this, we developed a MATLAB toolbox based on a graphical interactive interface (GUI) called surface space-based multivariate pattern analysis (SF-MVPA) in this manuscript. Unlike the traditional MVPA toolboxes, which often only include MVPA calculation processes after data preprocessing, SF-MVPA covers the complete pipeline of surface space-based MVPA, including raw data format conversion, surface reconstruction, functional magnetic resonance (fMRI) data preprocessing, comparative analysis, surface space-based MVPA, leave one-run out cross validation, and family-wise error correction. With SF-MVPA, users can complete the complete pipeline of surface space-based MVPA without programming. In addition, SF-MVPA is designed for parallel computing and hence has high computational efficiency. After introducing SF-MVPA, we analyzed a sample dataset of tonal working memory load. By comparison with another surface space-based MVPA toolbox named CoSMoMVPA, we found that the two toolboxes obtained consistent results. We hope that through this toolbox, users can more easily implement surface space-based MVPA. Frontiers Media S.A. 2022-11-21 /pmc/articles/PMC9720187/ /pubmed/36478878 http://dx.doi.org/10.3389/fnins.2022.1046752 Text en Copyright © 2022 Li, Gong, Shen, Rao, Ni and Zhang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Li, Qiang Gong, Dinghong Shen, Jie Rao, Chang Ni, Lei Zhang, Hongyi SF-MVPA: A from raw data to statistical results and surface space-based MVPA toolbox |
title | SF-MVPA: A from raw data to statistical results and surface space-based MVPA toolbox |
title_full | SF-MVPA: A from raw data to statistical results and surface space-based MVPA toolbox |
title_fullStr | SF-MVPA: A from raw data to statistical results and surface space-based MVPA toolbox |
title_full_unstemmed | SF-MVPA: A from raw data to statistical results and surface space-based MVPA toolbox |
title_short | SF-MVPA: A from raw data to statistical results and surface space-based MVPA toolbox |
title_sort | sf-mvpa: a from raw data to statistical results and surface space-based mvpa toolbox |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9720187/ https://www.ncbi.nlm.nih.gov/pubmed/36478878 http://dx.doi.org/10.3389/fnins.2022.1046752 |
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