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Exchanging Replicas with Unequal Cost, Infinitely and Permanently

[Image: see text] We developed a replica exchange method that is effectively parallelizable even if the computational cost of the Monte Carlo moves in the parallel replicas are considerably different, for instance, because the replicas run on different types of processor units or because of the algo...

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Autores principales: Roet, Sander, Zhang, Daniel T., van Erp, Titus S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9720720/
https://www.ncbi.nlm.nih.gov/pubmed/36394633
http://dx.doi.org/10.1021/acs.jpca.2c06004
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author Roet, Sander
Zhang, Daniel T.
van Erp, Titus S.
author_facet Roet, Sander
Zhang, Daniel T.
van Erp, Titus S.
author_sort Roet, Sander
collection PubMed
description [Image: see text] We developed a replica exchange method that is effectively parallelizable even if the computational cost of the Monte Carlo moves in the parallel replicas are considerably different, for instance, because the replicas run on different types of processor units or because of the algorithmic complexity. To prove detailed-balance, we make a paradigm shift from the common conceptual viewpoint in which the set of parallel replicas represents a high-dimensional superstate, to an ensemble-based criterion in which the other ensembles represent an environment that might or might not participate in the Monte Carlo move. In addition, based on a recent algorithm for computing permanents, we effectively increase the exchange rate to infinite without the steep factorial scaling as a function of the number of replicas. We illustrate the effectiveness of this replica exchange methodology by combining it with a quantitative path sampling method, replica exchange transition interface sampling (RETIS), in which the costs for a Monte Carlo move can vary enormously as paths in a RETIS algorithm do not have the same length and the average path lengths tend to vary considerably for the different path ensembles that run in parallel. This combination, coined ∞RETIS, was tested on three model systems.
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spelling pubmed-97207202022-12-06 Exchanging Replicas with Unequal Cost, Infinitely and Permanently Roet, Sander Zhang, Daniel T. van Erp, Titus S. J Phys Chem A [Image: see text] We developed a replica exchange method that is effectively parallelizable even if the computational cost of the Monte Carlo moves in the parallel replicas are considerably different, for instance, because the replicas run on different types of processor units or because of the algorithmic complexity. To prove detailed-balance, we make a paradigm shift from the common conceptual viewpoint in which the set of parallel replicas represents a high-dimensional superstate, to an ensemble-based criterion in which the other ensembles represent an environment that might or might not participate in the Monte Carlo move. In addition, based on a recent algorithm for computing permanents, we effectively increase the exchange rate to infinite without the steep factorial scaling as a function of the number of replicas. We illustrate the effectiveness of this replica exchange methodology by combining it with a quantitative path sampling method, replica exchange transition interface sampling (RETIS), in which the costs for a Monte Carlo move can vary enormously as paths in a RETIS algorithm do not have the same length and the average path lengths tend to vary considerably for the different path ensembles that run in parallel. This combination, coined ∞RETIS, was tested on three model systems. American Chemical Society 2022-11-17 2022-12-01 /pmc/articles/PMC9720720/ /pubmed/36394633 http://dx.doi.org/10.1021/acs.jpca.2c06004 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Roet, Sander
Zhang, Daniel T.
van Erp, Titus S.
Exchanging Replicas with Unequal Cost, Infinitely and Permanently
title Exchanging Replicas with Unequal Cost, Infinitely and Permanently
title_full Exchanging Replicas with Unequal Cost, Infinitely and Permanently
title_fullStr Exchanging Replicas with Unequal Cost, Infinitely and Permanently
title_full_unstemmed Exchanging Replicas with Unequal Cost, Infinitely and Permanently
title_short Exchanging Replicas with Unequal Cost, Infinitely and Permanently
title_sort exchanging replicas with unequal cost, infinitely and permanently
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9720720/
https://www.ncbi.nlm.nih.gov/pubmed/36394633
http://dx.doi.org/10.1021/acs.jpca.2c06004
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