Cargando…

Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments

BACKGROUND: Taxonomic profiling is a fundamental task in microbiome research that aims to detect and quantify the relative abundance of microorganisms in biological samples. Available methods using shotgun metagenomic data generally depend on the deposition of sequenced and taxonomically annotated g...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ruscheweyh, Hans-Joachim, Milanese, Alessio, Paoli, Lucas, Karcher, Nicolai, Clayssen, Quentin, Keller, Marisa Isabell, Wirbel, Jakob, Bork, Peer, Mende, Daniel R., Zeller, Georg, Sunagawa, Shinichi
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2022
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9721005/ https://www.ncbi.nlm.nih.gov/pubmed/36464731 http://dx.doi.org/10.1186/s40168-022-01410-z

Ejemplares similares

Microbial abundance, activity and population genomic profiling with mOTUs2
por: Milanese, Alessio, et al.
Publicado: (2019)

Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox
por: Wirbel, Jakob, et al.
Publicado: (2021)

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
por: Mende, Daniel R, et al.
Publicado: (2020)

proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes
por: Mende, Daniel R., et al.
Publicado: (2017)

CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation
por: Kumar, Surendra, et al.
Publicado: (2011)

OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters
por: García-López, Rodrigo, et al.
Publicado: (2021)

Inter-individual differences in the gene content of human gut bacterial species
por: Zhu, Ana, et al.
Publicado: (2015)

Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster
por: Liu, Yanting, et al.
Publicado: (2023)

mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes
por: Salazar, Guillem, et al.
Publicado: (2021)

Machine learning classification by fitting amplicon sequences to existing OTUs
por: Armour, Courtney R., et al.
Publicado: (2023)

The Relationship Between Shoulder Range of Motion and Arm Stress in College Pitchers: A MOTUS Baseball Study
por: Gulledge, Caleb, et al.
Publicado: (2020)

proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes
por: Fullam, Anthony, et al.
Publicado: (2022)

A new species of scops-owl (Aves, Strigiformes, Strigidae, Otus) from Príncipe Island (Gulf of Guinea, Africa) and novel insights into the systematic affinities within Otus
por: Melo, Martim, et al.
Publicado: (2022)

A Novel System for the Device-Based Measurement of Physical Activity, Sedentary Behavior, and Sleep (Motus): Usability Evaluation
por: Crowley, Patrick, et al.
Publicado: (2023)

A Comparison of Methods for Clustering 16S rRNA Sequences into OTUs
por: Chen, Wei, et al.
Publicado: (2013)

Taxonomy assignment approach determines the efficiency of identification of OTUs in marine nematodes
por: Holovachov, Oleksandr, et al.
Publicado: (2017)

Accuracy of microbial community diversity estimated by closed- and open-reference OTUs
por: Edgar, Robert C.
Publicado: (2017)

OptiFit: an Improved Method for Fitting Amplicon Sequences to Existing OTUs
por: Sovacool, Kelly L., et al.
Publicado: (2022)

The rumen microbiome inhibits methane formation through dietary choline supplementation
por: Li, Yang, et al.
Publicado: (2021)

Theory of the motion of the heavenly bodies moving about the sun in conic sections: a translation of Gauss's "theoria motus." with an appendix
por: Davis, Charles Henry
Publicado: (1857)

Filtering ASVs/OTUs via mutual information-based microbiome network analysis
por: Mokhtari, Elham Bayat, et al.
Publicado: (2022)

metaSNV: A tool for metagenomic strain level analysis
por: Costea, Paul Igor, et al.
Publicado: (2017)

Country-specific antibiotic use practices impact the human gut resistome
por: Forslund, Kristoffer, et al.
Publicado: (2013)

Motus Vita Est: Fruit Flies Need to Be More Active and Sleep Less to Adapt to Either a Longer or Harder Life
por: Zakharenko, Lyudmila P., et al.
Publicado: (2023)

A New Owl Species of the Genus Otus (Aves: Strigidae) from Lombok, Indonesia
por: Sangster, George, et al.
Publicado: (2013)

Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcoding
por: Leray, Matthieu, et al.
Publicado: (2017)

Endemic Cyprus Scops Owl Otus cyprius Readily Breeds in Artificial Nest Boxes
por: Iezekiel, Savvas, et al.
Publicado: (2021)

Biosynthetic potential of the global ocean microbiome
por: Paoli, Lucas, et al.
Publicado: (2022)

metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes
por: Van Rossum, Thea, et al.
Publicado: (2021)

DMSC: A Dynamic Multi-Seeds Method for Clustering 16S rRNA Sequences Into OTUs
por: Wei, Ze-Gang, et al.
Publicado: (2019)

Epicoccum nigrum-induced respiratory infection in a wild Eurasian scops owl (Otus scops)
por: RHIM, Haerin, et al.
Publicado: (2019)

Characterization of the complete mitochondrial genome of Otus lettia: exploring the mitochondrial evolution and phylogeny of owls (Strigiformes)
por: Yu, Jiaojiao, et al.
Publicado: (2021)

Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data
por: Mende, Daniel R., et al.
Publicado: (2012)

Temporal and technical variability of human gut metagenomes
por: Voigt, Anita Y, et al.
Publicado: (2015)

Weak Coherence in Abundance Patterns Between Bacterial Classes and Their Constituent OTUs Along a Regulated River
por: Ruiz-González, Clara, et al.
Publicado: (2015)

Cranial evolution in the extinct Rodrigues Island owl Otus murivorus (Strigidae), associated with unexpected ecological adaptations
por: Duhamel, Anaïs, et al.
Publicado: (2020)

Mate choice for body size leads to size assortative mating in the Ryukyu Scops Owl Otus elegans
por: Sawada, Akira, et al.
Publicado: (2022)

Morphologic and Genetic Analysis of Synhimantus (Synhimantus) laticeps from a Long-Eared Owl (Asio otus)
por: Lopes, Carolina, et al.
Publicado: (2023)

Nonrigid 3D motion estimation at high temporal resolution from prospectively undersampled k‐space data using low‐rank MR‐MOTUS
por: Huttinga, Niek R. F., et al.
Publicado: (2020)

Computational eco-systems biology in Tara Oceans: translating data into knowledge
por: Sunagawa, Shinichi, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_ct8lfa6r19jnq2id6qbtejkgjd