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A smile is all you need: predicting limiting activity coefficients from SMILES with natural language processing
The knowledge of mixtures’ phase equilibria is crucial in nature and technical chemistry. Phase equilibria calculations of mixtures require activity coefficients. However, experimental data on activity coefficients are often limited due to the high cost of experiments. For an accurate and efficient...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
RSC
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9721150/ https://www.ncbi.nlm.nih.gov/pubmed/36561987 http://dx.doi.org/10.1039/d2dd00058j |
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author | Winter, Benedikt Winter, Clemens Schilling, Johannes Bardow, André |
author_facet | Winter, Benedikt Winter, Clemens Schilling, Johannes Bardow, André |
author_sort | Winter, Benedikt |
collection | PubMed |
description | The knowledge of mixtures’ phase equilibria is crucial in nature and technical chemistry. Phase equilibria calculations of mixtures require activity coefficients. However, experimental data on activity coefficients are often limited due to the high cost of experiments. For an accurate and efficient prediction of activity coefficients, machine learning approaches have been recently developed. However, current machine learning approaches still extrapolate poorly for activity coefficients of unknown molecules. In this work, we introduce a SMILES-to-properties-transformer (SPT), a natural language processing network, to predict binary limiting activity coefficients from SMILES codes. To overcome the limitations of available experimental data, we initially train our network on a large dataset of synthetic data sampled from COSMO-RS (10 million data points) and then fine-tune the model on experimental data (20 870 data points). This training strategy enables the SPT to accurately predict limiting activity coefficients even for unknown molecules, cutting the mean prediction error in half compared to state-of-the-art models for activity coefficient predictions such as COSMO-RS and UNIFAC(Dortmund), and improving on recent machine learning approaches. |
format | Online Article Text |
id | pubmed-9721150 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | RSC |
record_format | MEDLINE/PubMed |
spelling | pubmed-97211502022-12-20 A smile is all you need: predicting limiting activity coefficients from SMILES with natural language processing Winter, Benedikt Winter, Clemens Schilling, Johannes Bardow, André Digit Discov Chemistry The knowledge of mixtures’ phase equilibria is crucial in nature and technical chemistry. Phase equilibria calculations of mixtures require activity coefficients. However, experimental data on activity coefficients are often limited due to the high cost of experiments. For an accurate and efficient prediction of activity coefficients, machine learning approaches have been recently developed. However, current machine learning approaches still extrapolate poorly for activity coefficients of unknown molecules. In this work, we introduce a SMILES-to-properties-transformer (SPT), a natural language processing network, to predict binary limiting activity coefficients from SMILES codes. To overcome the limitations of available experimental data, we initially train our network on a large dataset of synthetic data sampled from COSMO-RS (10 million data points) and then fine-tune the model on experimental data (20 870 data points). This training strategy enables the SPT to accurately predict limiting activity coefficients even for unknown molecules, cutting the mean prediction error in half compared to state-of-the-art models for activity coefficient predictions such as COSMO-RS and UNIFAC(Dortmund), and improving on recent machine learning approaches. RSC 2022-09-29 /pmc/articles/PMC9721150/ /pubmed/36561987 http://dx.doi.org/10.1039/d2dd00058j Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/ |
spellingShingle | Chemistry Winter, Benedikt Winter, Clemens Schilling, Johannes Bardow, André A smile is all you need: predicting limiting activity coefficients from SMILES with natural language processing |
title | A smile is all you need: predicting limiting activity coefficients from SMILES with natural language processing |
title_full | A smile is all you need: predicting limiting activity coefficients from SMILES with natural language processing |
title_fullStr | A smile is all you need: predicting limiting activity coefficients from SMILES with natural language processing |
title_full_unstemmed | A smile is all you need: predicting limiting activity coefficients from SMILES with natural language processing |
title_short | A smile is all you need: predicting limiting activity coefficients from SMILES with natural language processing |
title_sort | smile is all you need: predicting limiting activity coefficients from smiles with natural language processing |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9721150/ https://www.ncbi.nlm.nih.gov/pubmed/36561987 http://dx.doi.org/10.1039/d2dd00058j |
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