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Phenolic acid-degrading Paraburkholderia prime decomposition in forest soil
Plant-derived phenolic acids are catabolized by soil microorganisms whose activity may enhance the decomposition of soil organic carbon (SOC). We characterized whether phenolic acid-degrading bacteria enhance SOC mineralization in forest soils when primed with (13)C-labeled p-hydroxybenzoic acid (pH...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9723775/ https://www.ncbi.nlm.nih.gov/pubmed/36717596 http://dx.doi.org/10.1038/s43705-021-00009-z |
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author | Wilhelm, Roland C. DeRito, Christopher M. Shapleigh, James P. Madsen, Eugene L. Buckley, Daniel H. |
author_facet | Wilhelm, Roland C. DeRito, Christopher M. Shapleigh, James P. Madsen, Eugene L. Buckley, Daniel H. |
author_sort | Wilhelm, Roland C. |
collection | PubMed |
description | Plant-derived phenolic acids are catabolized by soil microorganisms whose activity may enhance the decomposition of soil organic carbon (SOC). We characterized whether phenolic acid-degrading bacteria enhance SOC mineralization in forest soils when primed with (13)C-labeled p-hydroxybenzoic acid (pHB). We further tested whether pHB-induced priming could explain differences in SOC content among mono-specific tree plantations in a 70-year-old common garden experiment. pHB addition primed significant losses of SOC (3–13 µmols C g(−1) dry wt soil over 7 days) compared to glucose, which reduced mineralization (-3 to -8 µmols C g(−1) dry wt soil over 7 days). The principal degraders of pHB were Paraburkholderia and Caballeronia in all plantations regardless of tree species or soil type, with one predominant phylotype (RP11(ASV)) enriched 23-fold following peak pHB respiration. We isolated and confirmed the phenolic degrading activity of a strain matching this phylotype (RP11(T)), which encoded numerous oxidative enzymes, including secretion signal-bearing laccase, Dyp-type peroxidase and aryl-alcohol oxidase. Increased relative abundance of RP11(ASV) corresponded with higher pHB respiration and expression of pHB monooxygenase (pobA), which was inversely proportional to SOC content among plantations. pobA expression proved a responsive measure of priming activity. We found that stimulating phenolic-acid degrading bacteria can prime decomposition and that this activity, corresponding with differences in tree species, is a potential mechanism in SOC cycling in forests. Overall, this study highlights the ecology and function of Paraburkholderia whose associations with plant roots and capacity to degrade phenolics suggest a role for specialized bacteria in the priming effect. |
format | Online Article Text |
id | pubmed-9723775 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-97237752023-01-04 Phenolic acid-degrading Paraburkholderia prime decomposition in forest soil Wilhelm, Roland C. DeRito, Christopher M. Shapleigh, James P. Madsen, Eugene L. Buckley, Daniel H. ISME Commun Article Plant-derived phenolic acids are catabolized by soil microorganisms whose activity may enhance the decomposition of soil organic carbon (SOC). We characterized whether phenolic acid-degrading bacteria enhance SOC mineralization in forest soils when primed with (13)C-labeled p-hydroxybenzoic acid (pHB). We further tested whether pHB-induced priming could explain differences in SOC content among mono-specific tree plantations in a 70-year-old common garden experiment. pHB addition primed significant losses of SOC (3–13 µmols C g(−1) dry wt soil over 7 days) compared to glucose, which reduced mineralization (-3 to -8 µmols C g(−1) dry wt soil over 7 days). The principal degraders of pHB were Paraburkholderia and Caballeronia in all plantations regardless of tree species or soil type, with one predominant phylotype (RP11(ASV)) enriched 23-fold following peak pHB respiration. We isolated and confirmed the phenolic degrading activity of a strain matching this phylotype (RP11(T)), which encoded numerous oxidative enzymes, including secretion signal-bearing laccase, Dyp-type peroxidase and aryl-alcohol oxidase. Increased relative abundance of RP11(ASV) corresponded with higher pHB respiration and expression of pHB monooxygenase (pobA), which was inversely proportional to SOC content among plantations. pobA expression proved a responsive measure of priming activity. We found that stimulating phenolic-acid degrading bacteria can prime decomposition and that this activity, corresponding with differences in tree species, is a potential mechanism in SOC cycling in forests. Overall, this study highlights the ecology and function of Paraburkholderia whose associations with plant roots and capacity to degrade phenolics suggest a role for specialized bacteria in the priming effect. Nature Publishing Group UK 2021-03-25 /pmc/articles/PMC9723775/ /pubmed/36717596 http://dx.doi.org/10.1038/s43705-021-00009-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Wilhelm, Roland C. DeRito, Christopher M. Shapleigh, James P. Madsen, Eugene L. Buckley, Daniel H. Phenolic acid-degrading Paraburkholderia prime decomposition in forest soil |
title | Phenolic acid-degrading Paraburkholderia prime decomposition in forest soil |
title_full | Phenolic acid-degrading Paraburkholderia prime decomposition in forest soil |
title_fullStr | Phenolic acid-degrading Paraburkholderia prime decomposition in forest soil |
title_full_unstemmed | Phenolic acid-degrading Paraburkholderia prime decomposition in forest soil |
title_short | Phenolic acid-degrading Paraburkholderia prime decomposition in forest soil |
title_sort | phenolic acid-degrading paraburkholderia prime decomposition in forest soil |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9723775/ https://www.ncbi.nlm.nih.gov/pubmed/36717596 http://dx.doi.org/10.1038/s43705-021-00009-z |
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