Cargando…

De novo whole-genome assembly in an interspecific hybrid table grape, ‘Shine Muscat’

The first genome sequence of an interspecific grape hybrid (Vitis labruscana × Vitis vinifera), ‘Shine Muscat’, an elite table grape cultivar bred in Japan, is presented. The resultant genome assemblies included two types of sequences: a haplotype-phased sequence of the highly heterozygous genomes a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shirasawa, Kenta, Hirakawa, Hideki, Azuma, Akifumi, Taniguchi, Fumiya, Yamamoto, Toshiya, Sato, Akihiko, Ghelfi, Andrea, Isobe, Sachiko N
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2022
Materias:	Resource Article: Genomes Explored
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9724765/ https://www.ncbi.nlm.nih.gov/pubmed/36342351 http://dx.doi.org/10.1093/dnares/dsac040

Ejemplares similares

Genome sequence and analysis of a Japanese radish (Raphanus sativus) cultivar named ‘Sakurajima Daikon’ possessing giant root
por: Shirasawa, Kenta, et al.
Publicado: (2020)

Chromosome-scale genome assembly of Japanese pear (Pyrus pyrifolia) variety ‘Nijisseiki’
por: Shirasawa, Kenta, et al.
Publicado: (2021)

Genome sequencing and analysis of two early-flowering cherry (Cerasus × kanzakura) varieties, ‘Kawazu-zakura’ and ‘Atami-zakura’
por: Shirasawa, Kenta, et al.
Publicado: (2021)

Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis
por: Rai, Amit, et al.
Publicado: (2022)

Whole-genome sequencing and analysis of two azaleas, Rhododendron ripense and Rhododendron kiyosumense
por: Shirasawa, Kenta, et al.
Publicado: (2021)

Chromosome-scale genome assembly of a Japanese chili pepper landrace, Capsicum annuum ‘Takanotsume’
por: Shirasawa, Kenta, et al.
Publicado: (2022)

Chromosome-scale haplotype-phased genome assemblies of the male and female lines of wild asparagus (Asparagus kiusianus), a dioecious plant species
por: Shirasawa, Kenta, et al.
Publicado: (2022)

Chromosome-level genome assembly of Japanese chestnut (Castanea crenata Sieb. et Zucc.) reveals conserved chromosomal segments in woody rosids
por: Shirasawa, Kenta, et al.
Publicado: (2021)

Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)
por: Kurokochi, Hiroyuki, et al.
Publicado: (2023)

Telomere-to-telomere genome assembly of an allotetraploid pernicious weed, Echinochloa phyllopogon
por: Sato, Mitsuhiko P, et al.
Publicado: (2023)

Chromosome-scale genome assembly of the transformation-amenable common wheat cultivar ‘Fielder’
por: Sato, Kazuhiro, et al.
Publicado: (2021)

Targeted deletion of grape retrotransposon associated with fruit skin color via CRISPR/Cas9 in Vitis labrascana ‘Shine Muscat’
por: Nakajima, Ikuko, et al.
Publicado: (2023)

Phased genome sequence of an interspecific hybrid flowering cherry, ‘Somei-Yoshino’ (Cerasus × yedoensis)
por: Shirasawa, Kenta, et al.
Publicado: (2019)

De novo genome assembly of two tomato ancestors, Solanum pimpinellifolium and Solanum lycopersicum var. cerasiforme, by long-read sequencing
por: Takei, Hitomi, et al.
Publicado: (2021)

A study on Shine-Muscat grape detection at maturity based on deep learning
por: Wei, Xinjie, et al.
Publicado: (2023)

The Ficus erecta genome aids Ceratocystis canker resistance breeding in common fig (F. carica)
por: Shirasawa, Kenta, et al.
Publicado: (2020)

Hayai-Annotation Plants: an ultra-fast and comprehensive functional gene annotation system in plants
por: Ghelfi, Andrea, et al.
Publicado: (2019)

Relationships between Instrumental and Sensory Quality Indices of Shine Muscat Grapes with Different Harvesting Times
por: Choi, Kyeong-Ok, et al.
Publicado: (2022)

Phylogenetic and Morphological Characterization of Cladosporium perangustum Associated with Flyspeck on Shine Muscat Grapes in South Korea
por: Hassan, Oliul, et al.
Publicado: (2021)

Transcriptome profiles of three Muscat table grape cultivars to dissect the mechanism of terpene biosynthesis
por: Sun, Lei, et al.
Publicado: (2019)

Genome assembly and transcriptomic analyses of the repeatedly rejuvenating jellyfish Turritopsis dohrnii
por: Hasegawa, Yoshinori, et al.
Publicado: (2022)

Mother nature speaks: Coronavirus, connectedness, and consciousness
por: Dossey, Larry
Publicado: (2020)

Alone, together: Social isolation, quarantine, and the coronavirus pandemic
por: Dossey, Larry
Publicado: (2020)

Healers in the pandemic: honoring the ultimate sacrifice
por: Dossey, Larry
Publicado: (2021)

The Coronavirus pandemic
por: Dossey, Larry
Publicado: (2022)

The genome of Lyophyllum shimeji provides insight into the initial evolution of ectomycorrhizal fungal genomes
por: Kobayashi, Yuuki, et al.
Publicado: (2023)

Genome and transcriptome analyses reveal genes involved in the formation of fine ridges on petal epidermal cells in Hibiscus trionum
por: Koshimizu, Shizuka, et al.
Publicado: (2023)

The accumulation profiles of terpene metabolites in three Muscat table grape cultivars through HS-SPME-GCMS
por: Sun, Lei, et al.
Publicado: (2020)

Insights into the evolution of symbiosis gene copy number and distribution from a chromosome-scale Lotus japonicus Gifu genome sequence
por: Kamal, Nadia, et al.
Publicado: (2020)

De novo genome assembly of the medicinal plant Gentiana macrophylla provides insights into the genomic evolution and biosynthesis of iridoids
por: Zhou, Tao, et al.
Publicado: (2022)

First Report of Anthracnose of Shine Muscat Caused by Colletotrichum fructicola in Korea
por: Lim, Yang-Sook, et al.
Publicado: (2019)

Chromosome-level de novo genome assemblies of over 100 plant species
por: Shirasawa, Kenta, et al.
Publicado: (2021)

Effect of Thidiazuron on Terpene Volatile Constituents and Terpenoid Biosynthesis Pathway Gene Expression of Shine Muscat (Vitis labrusca × V. vinifera) Grape Berries
por: Wang, Wu, et al.
Publicado: (2020)

Genome features of common vetch ( Vicia sativa ) in natural habitats
por: Shirasawa, Kenta, et al.
Publicado: (2021)

Analytical workflow of double-digest restriction site-associated DNA sequencing based on empirical and in silico optimization in tomato
por: Shirasawa, Kenta, et al.
Publicado: (2016)

Challenges to genome sequence dissection in sweetpotato
por: Isobe, Sachiko, et al.
Publicado: (2017)

Current status in whole genome sequencing and analysis of Ipomoea spp.
por: Isobe, Sachiko, et al.
Publicado: (2019)

Genome sequencing of four culinary herbs reveals terpenoid genes underlying chemodiversity in the Nepetoideae
por: Bornowski, Nolan, et al.
Publicado: (2020)

Exploring the evolutionary process of alkannin/shikonin O-acyltransferases by a reliable Lithospermum erythrorhizon genome
por: Tang, Chengyi
Publicado: (2021)

Chromosome-level genome assembly of Gynostemma pentaphyllum provides insights into gypenoside biosynthesis
por: Huang, Ding, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_vtfdvsstulhm752dn8e8bmu6ip