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Study of trioleoylglycerol two-layer and adiposome cross-section mimicking four-layer systems through atomic-level simulations

Adiposomes are artificially prepared lipid droplet (LD)-mimetic structures, which, unlike LDs, do not harbor proteins. The dynamics of interaction between triacylglycerols (TAGs), drug molecule, and phospholipids in adiposomes is currently not well-established. Trioleoylglycerol (TOG) molecule was d...

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Autor principal: Mirza, Ahmed Hammad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Crystallographic Association 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9726221/
https://www.ncbi.nlm.nih.gov/pubmed/36484071
http://dx.doi.org/10.1063/4.0000168
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author Mirza, Ahmed Hammad
author_facet Mirza, Ahmed Hammad
author_sort Mirza, Ahmed Hammad
collection PubMed
description Adiposomes are artificially prepared lipid droplet (LD)-mimetic structures, which, unlike LDs, do not harbor proteins. The dynamics of interaction between triacylglycerols (TAGs), drug molecule, and phospholipids in adiposomes is currently not well-established. Trioleoylglycerol (TOG) molecule was divided into three parts: two oleoyl tails and one 2-monooleoylglycerol (MOG). Forcefield parameters for two oleoyl tails were adopted from the AMBER18 repository while that of the MOG forcefield was taken from the literature. Charge correction was performed on the MOG forcefield before its utilization. After charge correction, the resulting TOG molecule had zero charge. TOG bilayer (2L) and tetralayer (4L) systems were prepared and simulated. TOG bilayer (2L) systems—modeled from two different initial conformations, the TOG3 conformation and the TOG2:1 conformation—showed that TOG2:1 conformation was more prevailing irrespective of the starting conformation and was subsequently used in further simulations. The hydrated TOG 2L system showed TOG–water solution solubility of 0.051 mol L(−1) which is near experimental values. This validated the correct parameterization of the TOG molecule. The simulations of 4L systems showed stable membrane behaviors toward the end of simulations. It was also observed that in the 4L system, the TOG molecules showed the formation of micelles with the drug molecule. Almost six TOGs remained continuously in contact with the drug molecule throughout the simulation. The availability of charge-corrected TOG parameterization is expected to equip future studies with a framework for molecular dynamics simulations of adiposomes and/or LDs at the atomic level.
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spelling pubmed-97262212022-12-07 Study of trioleoylglycerol two-layer and adiposome cross-section mimicking four-layer systems through atomic-level simulations Mirza, Ahmed Hammad Struct Dyn ARTICLES Adiposomes are artificially prepared lipid droplet (LD)-mimetic structures, which, unlike LDs, do not harbor proteins. The dynamics of interaction between triacylglycerols (TAGs), drug molecule, and phospholipids in adiposomes is currently not well-established. Trioleoylglycerol (TOG) molecule was divided into three parts: two oleoyl tails and one 2-monooleoylglycerol (MOG). Forcefield parameters for two oleoyl tails were adopted from the AMBER18 repository while that of the MOG forcefield was taken from the literature. Charge correction was performed on the MOG forcefield before its utilization. After charge correction, the resulting TOG molecule had zero charge. TOG bilayer (2L) and tetralayer (4L) systems were prepared and simulated. TOG bilayer (2L) systems—modeled from two different initial conformations, the TOG3 conformation and the TOG2:1 conformation—showed that TOG2:1 conformation was more prevailing irrespective of the starting conformation and was subsequently used in further simulations. The hydrated TOG 2L system showed TOG–water solution solubility of 0.051 mol L(−1) which is near experimental values. This validated the correct parameterization of the TOG molecule. The simulations of 4L systems showed stable membrane behaviors toward the end of simulations. It was also observed that in the 4L system, the TOG molecules showed the formation of micelles with the drug molecule. Almost six TOGs remained continuously in contact with the drug molecule throughout the simulation. The availability of charge-corrected TOG parameterization is expected to equip future studies with a framework for molecular dynamics simulations of adiposomes and/or LDs at the atomic level. American Crystallographic Association 2022-12-05 /pmc/articles/PMC9726221/ /pubmed/36484071 http://dx.doi.org/10.1063/4.0000168 Text en © 2022 Author(s). https://creativecommons.org/licenses/by/4.0/All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle ARTICLES
Mirza, Ahmed Hammad
Study of trioleoylglycerol two-layer and adiposome cross-section mimicking four-layer systems through atomic-level simulations
title Study of trioleoylglycerol two-layer and adiposome cross-section mimicking four-layer systems through atomic-level simulations
title_full Study of trioleoylglycerol two-layer and adiposome cross-section mimicking four-layer systems through atomic-level simulations
title_fullStr Study of trioleoylglycerol two-layer and adiposome cross-section mimicking four-layer systems through atomic-level simulations
title_full_unstemmed Study of trioleoylglycerol two-layer and adiposome cross-section mimicking four-layer systems through atomic-level simulations
title_short Study of trioleoylglycerol two-layer and adiposome cross-section mimicking four-layer systems through atomic-level simulations
title_sort study of trioleoylglycerol two-layer and adiposome cross-section mimicking four-layer systems through atomic-level simulations
topic ARTICLES
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9726221/
https://www.ncbi.nlm.nih.gov/pubmed/36484071
http://dx.doi.org/10.1063/4.0000168
work_keys_str_mv AT mirzaahmedhammad studyoftrioleoylglyceroltwolayerandadiposomecrosssectionmimickingfourlayersystemsthroughatomiclevelsimulations