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Construction of ceRNA network and key gene screening in cervical squamous intraepithelial lesions

This study aimed to construct an endogenous competition network for cervical squamous intraepithelial lesions using differential gene screening. METHODS: GSE149763 was used to screen differentially expressed long non-coding RNAs (lncRNAs) and mRNAs to predict correlated microRNAs (miRNAs). The corre...

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Autores principales: Qi, Ding, Li, Hongmei, Wang, Shuoqi, Wang, Shimeng, Zheng, Rui, Liu, Ning, Han, Buwei, Liu, Li
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9726336/
https://www.ncbi.nlm.nih.gov/pubmed/36482542
http://dx.doi.org/10.1097/MD.0000000000031928
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author Qi, Ding
Li, Hongmei
Wang, Shuoqi
Wang, Shimeng
Zheng, Rui
Liu, Ning
Han, Buwei
Liu, Li
author_facet Qi, Ding
Li, Hongmei
Wang, Shuoqi
Wang, Shimeng
Zheng, Rui
Liu, Ning
Han, Buwei
Liu, Li
author_sort Qi, Ding
collection PubMed
description This study aimed to construct an endogenous competition network for cervical squamous intraepithelial lesions using differential gene screening. METHODS: GSE149763 was used to screen differentially expressed long non-coding RNAs (lncRNAs) and mRNAs to predict correlated microRNAs (miRNAs). The correlated miRNAs and GSE105409 were used to screen differentially expressed miRNAs for differential co-expression analysis, and the co-expressed differentially expressed miRNAs were used to predict correlated mRNAs. Differentially expressed mRNAs, miRNAs, and lncRNAs were visualized, and differential gene screening, enrichment, and pathway analysis were performed. RESULTS: The ceRNA network of cervical squamous intraepithelial was successfully established and a potential differentially expressed network was identified. The key genes were VEGFA and FOS, and the key pathway was the MAPK signaling pathway. CONCLUSIONS: The differential expression and potential effects of the lncRNA BACH1-IT1/miR-140-5p/VEGFA axis, key genes, VEGFA and FOS, and MAPK signaling in CIN were clarified, and the occurrence and potential effects of CIN were further clarified. The underlying molecular mechanism provides a certain degree of reference for subsequent treatments and experimental research.
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spelling pubmed-97263362022-12-09 Construction of ceRNA network and key gene screening in cervical squamous intraepithelial lesions Qi, Ding Li, Hongmei Wang, Shuoqi Wang, Shimeng Zheng, Rui Liu, Ning Han, Buwei Liu, Li Medicine (Baltimore) 5700 This study aimed to construct an endogenous competition network for cervical squamous intraepithelial lesions using differential gene screening. METHODS: GSE149763 was used to screen differentially expressed long non-coding RNAs (lncRNAs) and mRNAs to predict correlated microRNAs (miRNAs). The correlated miRNAs and GSE105409 were used to screen differentially expressed miRNAs for differential co-expression analysis, and the co-expressed differentially expressed miRNAs were used to predict correlated mRNAs. Differentially expressed mRNAs, miRNAs, and lncRNAs were visualized, and differential gene screening, enrichment, and pathway analysis were performed. RESULTS: The ceRNA network of cervical squamous intraepithelial was successfully established and a potential differentially expressed network was identified. The key genes were VEGFA and FOS, and the key pathway was the MAPK signaling pathway. CONCLUSIONS: The differential expression and potential effects of the lncRNA BACH1-IT1/miR-140-5p/VEGFA axis, key genes, VEGFA and FOS, and MAPK signaling in CIN were clarified, and the occurrence and potential effects of CIN were further clarified. The underlying molecular mechanism provides a certain degree of reference for subsequent treatments and experimental research. Lippincott Williams & Wilkins 2022-12-02 /pmc/articles/PMC9726336/ /pubmed/36482542 http://dx.doi.org/10.1097/MD.0000000000031928 Text en Copyright © 2022 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle 5700
Qi, Ding
Li, Hongmei
Wang, Shuoqi
Wang, Shimeng
Zheng, Rui
Liu, Ning
Han, Buwei
Liu, Li
Construction of ceRNA network and key gene screening in cervical squamous intraepithelial lesions
title Construction of ceRNA network and key gene screening in cervical squamous intraepithelial lesions
title_full Construction of ceRNA network and key gene screening in cervical squamous intraepithelial lesions
title_fullStr Construction of ceRNA network and key gene screening in cervical squamous intraepithelial lesions
title_full_unstemmed Construction of ceRNA network and key gene screening in cervical squamous intraepithelial lesions
title_short Construction of ceRNA network and key gene screening in cervical squamous intraepithelial lesions
title_sort construction of cerna network and key gene screening in cervical squamous intraepithelial lesions
topic 5700
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9726336/
https://www.ncbi.nlm.nih.gov/pubmed/36482542
http://dx.doi.org/10.1097/MD.0000000000031928
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