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Proton transfer and conformational changes along the hydrogen bond network in heliorhodopsin
Heliorhodopsin releases a proton from the Schiff base during the L-state to M-state transition but not toward the protein bulk surface. Here we investigate proton transfer and induced structural changes along the H-bond network in heliorhodopsin using a quantum mechanical/molecular mechanical approa...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9726877/ https://www.ncbi.nlm.nih.gov/pubmed/36474019 http://dx.doi.org/10.1038/s42003-022-04311-x |
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author | Tsujimura, Masaki Chiba, Yoshihiro Saito, Keisuke Ishikita, Hiroshi |
author_facet | Tsujimura, Masaki Chiba, Yoshihiro Saito, Keisuke Ishikita, Hiroshi |
author_sort | Tsujimura, Masaki |
collection | PubMed |
description | Heliorhodopsin releases a proton from the Schiff base during the L-state to M-state transition but not toward the protein bulk surface. Here we investigate proton transfer and induced structural changes along the H-bond network in heliorhodopsin using a quantum mechanical/molecular mechanical approach and molecular dynamics simulations. Light-induced proton transfer could occur from the Schiff base toward Glu107, reorienting Ser76, followed by subsequent proton transfer toward His80. His80 protonation induces the reorientation of Trp246 on the extracellular surface, originating from the electrostatic interaction that propagates along the transmembrane H-bond network [His80…His23…H(2)O([H23/Q26])…Gln26…Trp246] over a distance of 15 Å. Furthermore, it induces structural fluctuation on the intracellular side in the H-bond network [His80…Asn16…Tyr92…Glu230…Arg104…Glu149], opening the inner cavity at the Tyr92 moiety. These may be a basis of how light-induced proton transfer causes conformational changes during the M-state to O-state transition. |
format | Online Article Text |
id | pubmed-9726877 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-97268772022-12-08 Proton transfer and conformational changes along the hydrogen bond network in heliorhodopsin Tsujimura, Masaki Chiba, Yoshihiro Saito, Keisuke Ishikita, Hiroshi Commun Biol Article Heliorhodopsin releases a proton from the Schiff base during the L-state to M-state transition but not toward the protein bulk surface. Here we investigate proton transfer and induced structural changes along the H-bond network in heliorhodopsin using a quantum mechanical/molecular mechanical approach and molecular dynamics simulations. Light-induced proton transfer could occur from the Schiff base toward Glu107, reorienting Ser76, followed by subsequent proton transfer toward His80. His80 protonation induces the reorientation of Trp246 on the extracellular surface, originating from the electrostatic interaction that propagates along the transmembrane H-bond network [His80…His23…H(2)O([H23/Q26])…Gln26…Trp246] over a distance of 15 Å. Furthermore, it induces structural fluctuation on the intracellular side in the H-bond network [His80…Asn16…Tyr92…Glu230…Arg104…Glu149], opening the inner cavity at the Tyr92 moiety. These may be a basis of how light-induced proton transfer causes conformational changes during the M-state to O-state transition. Nature Publishing Group UK 2022-12-06 /pmc/articles/PMC9726877/ /pubmed/36474019 http://dx.doi.org/10.1038/s42003-022-04311-x Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Tsujimura, Masaki Chiba, Yoshihiro Saito, Keisuke Ishikita, Hiroshi Proton transfer and conformational changes along the hydrogen bond network in heliorhodopsin |
title | Proton transfer and conformational changes along the hydrogen bond network in heliorhodopsin |
title_full | Proton transfer and conformational changes along the hydrogen bond network in heliorhodopsin |
title_fullStr | Proton transfer and conformational changes along the hydrogen bond network in heliorhodopsin |
title_full_unstemmed | Proton transfer and conformational changes along the hydrogen bond network in heliorhodopsin |
title_short | Proton transfer and conformational changes along the hydrogen bond network in heliorhodopsin |
title_sort | proton transfer and conformational changes along the hydrogen bond network in heliorhodopsin |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9726877/ https://www.ncbi.nlm.nih.gov/pubmed/36474019 http://dx.doi.org/10.1038/s42003-022-04311-x |
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