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A symmetric prior knowledge based deep learning model for intracerebral hemorrhage lesion segmentation

Background: Accurate localization and classification of intracerebral hemorrhage (ICH) lesions are of great significance for the treatment and prognosis of patients with ICH. The purpose of this study is to develop a symmetric prior knowledge based deep learning model to segment ICH lesions in compu...

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Autores principales: Nijiati, Mayidili, Tuersun, Abudouresuli, Zhang, Yue, Yuan, Qing, Gong, Ping, Abulizi, Abudoukeyoumujiang, Tuoheti, Awanisa, Abulaiti, Adili, Zou, Xiaoguang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9727183/
https://www.ncbi.nlm.nih.gov/pubmed/36505076
http://dx.doi.org/10.3389/fphys.2022.977427
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author Nijiati, Mayidili
Tuersun, Abudouresuli
Zhang, Yue
Yuan, Qing
Gong, Ping
Abulizi, Abudoukeyoumujiang
Tuoheti, Awanisa
Abulaiti, Adili
Zou, Xiaoguang
author_facet Nijiati, Mayidili
Tuersun, Abudouresuli
Zhang, Yue
Yuan, Qing
Gong, Ping
Abulizi, Abudoukeyoumujiang
Tuoheti, Awanisa
Abulaiti, Adili
Zou, Xiaoguang
author_sort Nijiati, Mayidili
collection PubMed
description Background: Accurate localization and classification of intracerebral hemorrhage (ICH) lesions are of great significance for the treatment and prognosis of patients with ICH. The purpose of this study is to develop a symmetric prior knowledge based deep learning model to segment ICH lesions in computed tomography (CT). Methods: A novel symmetric Transformer network (Sym-TransNet) is designed to segment ICH lesions in CT images. A cohort of 1,157 patients diagnosed with ICH is established to train (n = 857), validate (n = 100), and test (n = 200) the Sym-TransNet. A healthy cohort of 200 subjects is added, establishing a test set with balanced positive and negative cases (n = 400), to further evaluate the accuracy, sensitivity, and specificity of the diagnosis of ICH. The segmentation results are obtained after data pre-processing and Sym-TransNet. The DICE coefficient is used to evaluate the similarity between the segmentation results and the segmentation gold standard. Furthermore, some recent deep learning methods are reproduced to compare with Sym-TransNet, and statistical analysis is performed to prove the statistical significance of the proposed method. Ablation experiments are conducted to prove that each component in Sym-TransNet could effectively improve the DICE coefficient of ICH lesions. Results: For the segmentation of ICH lesions, the DICE coefficient of Sym-TransNet is 0.716 [Formula: see text] 0.031 in the test set which contains 200 CT images of ICH. The DICE coefficients of five subtypes of ICH, including intraparenchymal hemorrhage (IPH), intraventricular hemorrhage (IVH), extradural hemorrhage (EDH), subdural hemorrhage (SDH), and subarachnoid hemorrhage (SAH), are 0.784 [Formula: see text] 0.039, 0.680 [Formula: see text] 0.049, 0.359 [Formula: see text] 0.186, 0.534 [Formula: see text] 0.455, and 0.337 [Formula: see text] 0.044, respectively. Statistical results show that the proposed Sym-TransNet can significantly improve the DICE coefficient of ICH lesions in most cases. In addition, the accuracy, sensitivity, and specificity of Sym-TransNet in the diagnosis of ICH in 400 CT images are 91.25%, 98.50%, and 84.00%, respectively. Conclusion: Compared with recent mainstream deep learning methods, the proposed Sym-TransNet can segment and identify different types of lesions from CT images of ICH patients more effectively. Moreover, the Sym-TransNet can diagnose ICH more stably and efficiently, which has clinical application prospects.
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spelling pubmed-97271832022-12-08 A symmetric prior knowledge based deep learning model for intracerebral hemorrhage lesion segmentation Nijiati, Mayidili Tuersun, Abudouresuli Zhang, Yue Yuan, Qing Gong, Ping Abulizi, Abudoukeyoumujiang Tuoheti, Awanisa Abulaiti, Adili Zou, Xiaoguang Front Physiol Physiology Background: Accurate localization and classification of intracerebral hemorrhage (ICH) lesions are of great significance for the treatment and prognosis of patients with ICH. The purpose of this study is to develop a symmetric prior knowledge based deep learning model to segment ICH lesions in computed tomography (CT). Methods: A novel symmetric Transformer network (Sym-TransNet) is designed to segment ICH lesions in CT images. A cohort of 1,157 patients diagnosed with ICH is established to train (n = 857), validate (n = 100), and test (n = 200) the Sym-TransNet. A healthy cohort of 200 subjects is added, establishing a test set with balanced positive and negative cases (n = 400), to further evaluate the accuracy, sensitivity, and specificity of the diagnosis of ICH. The segmentation results are obtained after data pre-processing and Sym-TransNet. The DICE coefficient is used to evaluate the similarity between the segmentation results and the segmentation gold standard. Furthermore, some recent deep learning methods are reproduced to compare with Sym-TransNet, and statistical analysis is performed to prove the statistical significance of the proposed method. Ablation experiments are conducted to prove that each component in Sym-TransNet could effectively improve the DICE coefficient of ICH lesions. Results: For the segmentation of ICH lesions, the DICE coefficient of Sym-TransNet is 0.716 [Formula: see text] 0.031 in the test set which contains 200 CT images of ICH. The DICE coefficients of five subtypes of ICH, including intraparenchymal hemorrhage (IPH), intraventricular hemorrhage (IVH), extradural hemorrhage (EDH), subdural hemorrhage (SDH), and subarachnoid hemorrhage (SAH), are 0.784 [Formula: see text] 0.039, 0.680 [Formula: see text] 0.049, 0.359 [Formula: see text] 0.186, 0.534 [Formula: see text] 0.455, and 0.337 [Formula: see text] 0.044, respectively. Statistical results show that the proposed Sym-TransNet can significantly improve the DICE coefficient of ICH lesions in most cases. In addition, the accuracy, sensitivity, and specificity of Sym-TransNet in the diagnosis of ICH in 400 CT images are 91.25%, 98.50%, and 84.00%, respectively. Conclusion: Compared with recent mainstream deep learning methods, the proposed Sym-TransNet can segment and identify different types of lesions from CT images of ICH patients more effectively. Moreover, the Sym-TransNet can diagnose ICH more stably and efficiently, which has clinical application prospects. Frontiers Media S.A. 2022-11-23 /pmc/articles/PMC9727183/ /pubmed/36505076 http://dx.doi.org/10.3389/fphys.2022.977427 Text en Copyright © 2022 Nijiati, Tuersun, Zhang, Yuan, Gong, Abulizi, Tuoheti, Abulaiti and Zou. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Physiology
Nijiati, Mayidili
Tuersun, Abudouresuli
Zhang, Yue
Yuan, Qing
Gong, Ping
Abulizi, Abudoukeyoumujiang
Tuoheti, Awanisa
Abulaiti, Adili
Zou, Xiaoguang
A symmetric prior knowledge based deep learning model for intracerebral hemorrhage lesion segmentation
title A symmetric prior knowledge based deep learning model for intracerebral hemorrhage lesion segmentation
title_full A symmetric prior knowledge based deep learning model for intracerebral hemorrhage lesion segmentation
title_fullStr A symmetric prior knowledge based deep learning model for intracerebral hemorrhage lesion segmentation
title_full_unstemmed A symmetric prior knowledge based deep learning model for intracerebral hemorrhage lesion segmentation
title_short A symmetric prior knowledge based deep learning model for intracerebral hemorrhage lesion segmentation
title_sort symmetric prior knowledge based deep learning model for intracerebral hemorrhage lesion segmentation
topic Physiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9727183/
https://www.ncbi.nlm.nih.gov/pubmed/36505076
http://dx.doi.org/10.3389/fphys.2022.977427
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