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An image dataset of diverse safflower (Carthamus tinctorius L.) genotypes for salt response phenotyping

This article describes a dataset of high-resolution visible-spectrum images of safflower (Carthamus tinctorius L.) plants obtained from a LemnaTec Scanalyser automated phenomics platform along with the associated image analysis output and manually acquired biomass data. This series contains 1832 ima...

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Autores principales: Thoday-Kennedy, Emily, Dimech, Adam M., Joshi, Sameer, Daetwyler, Hans D., Hudson, David, Spangenberg, German, Hayden, Matthew, Kant, Surya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9727628/
https://www.ncbi.nlm.nih.gov/pubmed/36506801
http://dx.doi.org/10.1016/j.dib.2022.108787
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author Thoday-Kennedy, Emily
Dimech, Adam M.
Joshi, Sameer
Daetwyler, Hans D.
Hudson, David
Spangenberg, German
Hayden, Matthew
Kant, Surya
author_facet Thoday-Kennedy, Emily
Dimech, Adam M.
Joshi, Sameer
Daetwyler, Hans D.
Hudson, David
Spangenberg, German
Hayden, Matthew
Kant, Surya
author_sort Thoday-Kennedy, Emily
collection PubMed
description This article describes a dataset of high-resolution visible-spectrum images of safflower (Carthamus tinctorius L.) plants obtained from a LemnaTec Scanalyser automated phenomics platform along with the associated image analysis output and manually acquired biomass data. This series contains 1832 images of 200 diverse safflower genotypes, acquired at the Plant Phenomics Victoria, Horsham, Victoria, Australia. Two Prosilica GT RGB (red-green-blue) cameras were used to generate 6576 × 4384 pixel portable network graphic (PNG) images. Safflower genotypes were either subjected to a salt treatment (250 mM NaCl) or grown as a control (0 mM NaCl) and imaged daily from 15 to 36 days after sowing. Each snapshot consists of four images collected at a point in time; one of which is taken from above (top-view) and the remainder from the side at either 0°, 120° or 240°. The dataset also includes analysis output quantifying traits and describing phenotypes, as well as manually collected biomass and leaf ion content data. The usage of the dataset is already demonstrated in Thoday-Kennedy et al. (2021) [1]. This dataset describes the early growth differences of diverse safflower genotypes and identified genotypes tolerant or susceptible to salinity stress. This dataset provides detailed image analysis parameters for phenotyping a large population of safflower that can be used for the training of image-based trait identification pipelines for a wide range of crop species.
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spelling pubmed-97276282022-12-08 An image dataset of diverse safflower (Carthamus tinctorius L.) genotypes for salt response phenotyping Thoday-Kennedy, Emily Dimech, Adam M. Joshi, Sameer Daetwyler, Hans D. Hudson, David Spangenberg, German Hayden, Matthew Kant, Surya Data Brief Data Article This article describes a dataset of high-resolution visible-spectrum images of safflower (Carthamus tinctorius L.) plants obtained from a LemnaTec Scanalyser automated phenomics platform along with the associated image analysis output and manually acquired biomass data. This series contains 1832 images of 200 diverse safflower genotypes, acquired at the Plant Phenomics Victoria, Horsham, Victoria, Australia. Two Prosilica GT RGB (red-green-blue) cameras were used to generate 6576 × 4384 pixel portable network graphic (PNG) images. Safflower genotypes were either subjected to a salt treatment (250 mM NaCl) or grown as a control (0 mM NaCl) and imaged daily from 15 to 36 days after sowing. Each snapshot consists of four images collected at a point in time; one of which is taken from above (top-view) and the remainder from the side at either 0°, 120° or 240°. The dataset also includes analysis output quantifying traits and describing phenotypes, as well as manually collected biomass and leaf ion content data. The usage of the dataset is already demonstrated in Thoday-Kennedy et al. (2021) [1]. This dataset describes the early growth differences of diverse safflower genotypes and identified genotypes tolerant or susceptible to salinity stress. This dataset provides detailed image analysis parameters for phenotyping a large population of safflower that can be used for the training of image-based trait identification pipelines for a wide range of crop species. Elsevier 2022-11-29 /pmc/articles/PMC9727628/ /pubmed/36506801 http://dx.doi.org/10.1016/j.dib.2022.108787 Text en Crown Copyright © 2022 Published by Elsevier Inc. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data Article
Thoday-Kennedy, Emily
Dimech, Adam M.
Joshi, Sameer
Daetwyler, Hans D.
Hudson, David
Spangenberg, German
Hayden, Matthew
Kant, Surya
An image dataset of diverse safflower (Carthamus tinctorius L.) genotypes for salt response phenotyping
title An image dataset of diverse safflower (Carthamus tinctorius L.) genotypes for salt response phenotyping
title_full An image dataset of diverse safflower (Carthamus tinctorius L.) genotypes for salt response phenotyping
title_fullStr An image dataset of diverse safflower (Carthamus tinctorius L.) genotypes for salt response phenotyping
title_full_unstemmed An image dataset of diverse safflower (Carthamus tinctorius L.) genotypes for salt response phenotyping
title_short An image dataset of diverse safflower (Carthamus tinctorius L.) genotypes for salt response phenotyping
title_sort image dataset of diverse safflower (carthamus tinctorius l.) genotypes for salt response phenotyping
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9727628/
https://www.ncbi.nlm.nih.gov/pubmed/36506801
http://dx.doi.org/10.1016/j.dib.2022.108787
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