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Biokinetics of Protein Degrading Clostridium cadaveris and Clostridium sporogenes in Batch and Continuous Mode of Operations

A quantitative real-time polymerase chain reaction (QPCR) was applied to estimate biokinetic coefficients of Clostridium cadaveris and Clostridium sporogenes, which utilize protein as carbon source. Experimental data on changes in peptone concentration and 16S rRNA gene copy numbers of C. cadaveris...

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Autores principales: Koo, Taewoan, Jannat, Md Abu Hanifa, Hwang, Seokhwan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Korean Society for Microbiology and Biotechnology 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9728166/
https://www.ncbi.nlm.nih.gov/pubmed/31986562
http://dx.doi.org/10.4014/jmb.1908.08054
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author Koo, Taewoan
Jannat, Md Abu Hanifa
Hwang, Seokhwan
author_facet Koo, Taewoan
Jannat, Md Abu Hanifa
Hwang, Seokhwan
author_sort Koo, Taewoan
collection PubMed
description A quantitative real-time polymerase chain reaction (QPCR) was applied to estimate biokinetic coefficients of Clostridium cadaveris and Clostridium sporogenes, which utilize protein as carbon source. Experimental data on changes in peptone concentration and 16S rRNA gene copy numbers of C. cadaveris and C. sporogenes were fitted to model. The fourth-order Runge-Kutta approximation with non-linear least squares analysis was employed to solve the ordinary differential equations to estimate biokinetic coefficients. The maximum specific growth rate (μ(max)), half-saturation concentration (K(s)), growth yield (Y), and decay coefficient (K(d)) of C. cadaveris and C.sporogenes were 0.73 ± 0.05 and 1.35 ± 0.32 h(-1), 6.07 ± 1.52 and 5.67 ± 1.53 g/l, 2.25 ± 0.75 x 10(10) and 7.92 ± 3.71 x 10(9) copies/g, 0.002 ± 0.003 and 0.002 ± 0.001 h(-1), respectively. The theoretical specific growth rate of C. sporogenes always exceeded that of C. cadaveris at peptone concentration higher than 3.62 g/l. When the influent peptone concentration was 5.0 g/l, the concentration of C.cadaveris gradually decreased to the steady value of 2.9 x 10(10) copies/ml at 4 h Hydraulic retention time (HRT), which indicates a 67.1% reduction of the initial population, but the wash out occurred at HRTs of 1.9 and 3.2 h. The 16S rRNA gene copy numbers of C. sporogenes gradually decreased to steady values ranging from 1.1 x 10(10) to 2.9 x 10(10) copies/ml. C. sporogenes species was predicted to wash out at an HRT of 1.6 h.
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spelling pubmed-97281662022-12-13 Biokinetics of Protein Degrading Clostridium cadaveris and Clostridium sporogenes in Batch and Continuous Mode of Operations Koo, Taewoan Jannat, Md Abu Hanifa Hwang, Seokhwan J Microbiol Biotechnol Research article A quantitative real-time polymerase chain reaction (QPCR) was applied to estimate biokinetic coefficients of Clostridium cadaveris and Clostridium sporogenes, which utilize protein as carbon source. Experimental data on changes in peptone concentration and 16S rRNA gene copy numbers of C. cadaveris and C. sporogenes were fitted to model. The fourth-order Runge-Kutta approximation with non-linear least squares analysis was employed to solve the ordinary differential equations to estimate biokinetic coefficients. The maximum specific growth rate (μ(max)), half-saturation concentration (K(s)), growth yield (Y), and decay coefficient (K(d)) of C. cadaveris and C.sporogenes were 0.73 ± 0.05 and 1.35 ± 0.32 h(-1), 6.07 ± 1.52 and 5.67 ± 1.53 g/l, 2.25 ± 0.75 x 10(10) and 7.92 ± 3.71 x 10(9) copies/g, 0.002 ± 0.003 and 0.002 ± 0.001 h(-1), respectively. The theoretical specific growth rate of C. sporogenes always exceeded that of C. cadaveris at peptone concentration higher than 3.62 g/l. When the influent peptone concentration was 5.0 g/l, the concentration of C.cadaveris gradually decreased to the steady value of 2.9 x 10(10) copies/ml at 4 h Hydraulic retention time (HRT), which indicates a 67.1% reduction of the initial population, but the wash out occurred at HRTs of 1.9 and 3.2 h. The 16S rRNA gene copy numbers of C. sporogenes gradually decreased to steady values ranging from 1.1 x 10(10) to 2.9 x 10(10) copies/ml. C. sporogenes species was predicted to wash out at an HRT of 1.6 h. The Korean Society for Microbiology and Biotechnology 2020-04-28 2020-01-17 /pmc/articles/PMC9728166/ /pubmed/31986562 http://dx.doi.org/10.4014/jmb.1908.08054 Text en Copyright© 2020 by The Korean Society for Microbiology and Biotechnology https://creativecommons.org/licenses/by/4.0/This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research article
Koo, Taewoan
Jannat, Md Abu Hanifa
Hwang, Seokhwan
Biokinetics of Protein Degrading Clostridium cadaveris and Clostridium sporogenes in Batch and Continuous Mode of Operations
title Biokinetics of Protein Degrading Clostridium cadaveris and Clostridium sporogenes in Batch and Continuous Mode of Operations
title_full Biokinetics of Protein Degrading Clostridium cadaveris and Clostridium sporogenes in Batch and Continuous Mode of Operations
title_fullStr Biokinetics of Protein Degrading Clostridium cadaveris and Clostridium sporogenes in Batch and Continuous Mode of Operations
title_full_unstemmed Biokinetics of Protein Degrading Clostridium cadaveris and Clostridium sporogenes in Batch and Continuous Mode of Operations
title_short Biokinetics of Protein Degrading Clostridium cadaveris and Clostridium sporogenes in Batch and Continuous Mode of Operations
title_sort biokinetics of protein degrading clostridium cadaveris and clostridium sporogenes in batch and continuous mode of operations
topic Research article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9728166/
https://www.ncbi.nlm.nih.gov/pubmed/31986562
http://dx.doi.org/10.4014/jmb.1908.08054
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