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Neural-signature methods for structured EHR prediction

Models that can effectively represent structured Electronic Healthcare Records (EHR) are central to an increasing range of applications in healthcare. Due to the sequential nature of health data, Recurrent Neural Networks have emerged as the dominant component within state-of-the-art architectures....

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Autores principales: Vauvelle, Andre, Creed, Paidi, Denaxas, Spiros
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9730578/
https://www.ncbi.nlm.nih.gov/pubmed/36476601
http://dx.doi.org/10.1186/s12911-022-02055-6
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author Vauvelle, Andre
Creed, Paidi
Denaxas, Spiros
author_facet Vauvelle, Andre
Creed, Paidi
Denaxas, Spiros
author_sort Vauvelle, Andre
collection PubMed
description Models that can effectively represent structured Electronic Healthcare Records (EHR) are central to an increasing range of applications in healthcare. Due to the sequential nature of health data, Recurrent Neural Networks have emerged as the dominant component within state-of-the-art architectures. The signature transform represents an alternative modelling paradigm for sequential data. This transform provides a non-learnt approach to creating a fixed vector representation of temporal features and has shown strong performances across an increasing number of domains, including medical data. However, the signature method has not yet been applied to structured EHR data. To this end, we follow recent work that enables the signature to be used as a differentiable layer within a neural architecture enabling application in high dimensional domains where calculation would have previously been intractable. Using a heart failure prediction task as an exemplar, we provide an empirical evaluation of different variations of the signature method and compare against state-of-the-art baselines. This first application of neural-signature methods in real-world healthcare data shows a competitive performance when compared to strong baselines and thus warrants further investigation within the health domain.
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spelling pubmed-97305782022-12-09 Neural-signature methods for structured EHR prediction Vauvelle, Andre Creed, Paidi Denaxas, Spiros BMC Med Inform Decis Mak Research Models that can effectively represent structured Electronic Healthcare Records (EHR) are central to an increasing range of applications in healthcare. Due to the sequential nature of health data, Recurrent Neural Networks have emerged as the dominant component within state-of-the-art architectures. The signature transform represents an alternative modelling paradigm for sequential data. This transform provides a non-learnt approach to creating a fixed vector representation of temporal features and has shown strong performances across an increasing number of domains, including medical data. However, the signature method has not yet been applied to structured EHR data. To this end, we follow recent work that enables the signature to be used as a differentiable layer within a neural architecture enabling application in high dimensional domains where calculation would have previously been intractable. Using a heart failure prediction task as an exemplar, we provide an empirical evaluation of different variations of the signature method and compare against state-of-the-art baselines. This first application of neural-signature methods in real-world healthcare data shows a competitive performance when compared to strong baselines and thus warrants further investigation within the health domain. BioMed Central 2022-12-07 /pmc/articles/PMC9730578/ /pubmed/36476601 http://dx.doi.org/10.1186/s12911-022-02055-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Vauvelle, Andre
Creed, Paidi
Denaxas, Spiros
Neural-signature methods for structured EHR prediction
title Neural-signature methods for structured EHR prediction
title_full Neural-signature methods for structured EHR prediction
title_fullStr Neural-signature methods for structured EHR prediction
title_full_unstemmed Neural-signature methods for structured EHR prediction
title_short Neural-signature methods for structured EHR prediction
title_sort neural-signature methods for structured ehr prediction
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9730578/
https://www.ncbi.nlm.nih.gov/pubmed/36476601
http://dx.doi.org/10.1186/s12911-022-02055-6
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