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Identification of biomarkers associated with CD8+ T cells in rheumatoid arthritis and their pan-cancer analysis

INTRODUCTION: Rheumatoid arthritis (RA), a prevailing chronic progressive autoimmune disease, seriously affects the patient's quality of life. However, there is still a lack of precise treatment and management methods in clinical practice. Previous studies showed that CD8+ T cells take a lead i...

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Autores principales: Zhao, Zhenyu, Ren, Jie, Xie, Siping, Zou, Longchun, Zhao, Qianyue, Zeng, Shan, Zha, Dingsheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9730809/
https://www.ncbi.nlm.nih.gov/pubmed/36505419
http://dx.doi.org/10.3389/fimmu.2022.1044909
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author Zhao, Zhenyu
Ren, Jie
Xie, Siping
Zou, Longchun
Zhao, Qianyue
Zeng, Shan
Zha, Dingsheng
author_facet Zhao, Zhenyu
Ren, Jie
Xie, Siping
Zou, Longchun
Zhao, Qianyue
Zeng, Shan
Zha, Dingsheng
author_sort Zhao, Zhenyu
collection PubMed
description INTRODUCTION: Rheumatoid arthritis (RA), a prevailing chronic progressive autoimmune disease, seriously affects the patient's quality of life. However, there is still a lack of precise treatment and management methods in clinical practice. Previous studies showed that CD8+ T cells take a lead in the progression of RA. METHODS: Genes closely related to CD8+T cells in RA were identified through multiple RA datasets, CIBERSORT, and WGCNA algorithms. Further machine learning analysis were performed to identify CD8+T cell-related genes most closely related to RA. In addition, the relationship between these three key genes and 33 cancer species was also explored in this study. RESULTS: In this study, 10 genes were identified to be closely related to CD8+T cells in RA. Machine learning analysis identified 3 CD8+T cell-related genes most closely related to RA: CD8A, GZMA, and PRF1. DISCUSSION: Our research aims to provide new ideas for the clinical treatment of RA.
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spelling pubmed-97308092022-12-09 Identification of biomarkers associated with CD8+ T cells in rheumatoid arthritis and their pan-cancer analysis Zhao, Zhenyu Ren, Jie Xie, Siping Zou, Longchun Zhao, Qianyue Zeng, Shan Zha, Dingsheng Front Immunol Immunology INTRODUCTION: Rheumatoid arthritis (RA), a prevailing chronic progressive autoimmune disease, seriously affects the patient's quality of life. However, there is still a lack of precise treatment and management methods in clinical practice. Previous studies showed that CD8+ T cells take a lead in the progression of RA. METHODS: Genes closely related to CD8+T cells in RA were identified through multiple RA datasets, CIBERSORT, and WGCNA algorithms. Further machine learning analysis were performed to identify CD8+T cell-related genes most closely related to RA. In addition, the relationship between these three key genes and 33 cancer species was also explored in this study. RESULTS: In this study, 10 genes were identified to be closely related to CD8+T cells in RA. Machine learning analysis identified 3 CD8+T cell-related genes most closely related to RA: CD8A, GZMA, and PRF1. DISCUSSION: Our research aims to provide new ideas for the clinical treatment of RA. Frontiers Media S.A. 2022-11-24 /pmc/articles/PMC9730809/ /pubmed/36505419 http://dx.doi.org/10.3389/fimmu.2022.1044909 Text en Copyright © 2022 Zhao, Ren, Xie, Zou, Zhao, Zeng and Zha https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Zhao, Zhenyu
Ren, Jie
Xie, Siping
Zou, Longchun
Zhao, Qianyue
Zeng, Shan
Zha, Dingsheng
Identification of biomarkers associated with CD8+ T cells in rheumatoid arthritis and their pan-cancer analysis
title Identification of biomarkers associated with CD8+ T cells in rheumatoid arthritis and their pan-cancer analysis
title_full Identification of biomarkers associated with CD8+ T cells in rheumatoid arthritis and their pan-cancer analysis
title_fullStr Identification of biomarkers associated with CD8+ T cells in rheumatoid arthritis and their pan-cancer analysis
title_full_unstemmed Identification of biomarkers associated with CD8+ T cells in rheumatoid arthritis and their pan-cancer analysis
title_short Identification of biomarkers associated with CD8+ T cells in rheumatoid arthritis and their pan-cancer analysis
title_sort identification of biomarkers associated with cd8+ t cells in rheumatoid arthritis and their pan-cancer analysis
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9730809/
https://www.ncbi.nlm.nih.gov/pubmed/36505419
http://dx.doi.org/10.3389/fimmu.2022.1044909
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