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Cardiac MRI segmentation of the atria based on UU-NET

BACKGROUND AND OBJECTIVE: In today's society, people's work pressure, coupled with irregular diet, lack of exercise and other bad lifestyle, resulting in frequent cardiovascular diseases. Medical imaging has made great progress in modern society, among which the role of MRI in cardiovascul...

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Autores principales: Wang, Yi, Li, Shu-Ting, Huang, Jing, Lai, Qing-Quan, Guo, Yi-Fan, Huang, Yin-Hui, Li, Yuan-Zhe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9731285/
https://www.ncbi.nlm.nih.gov/pubmed/36505371
http://dx.doi.org/10.3389/fcvm.2022.1011916
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author Wang, Yi
Li, Shu-Ting
Huang, Jing
Lai, Qing-Quan
Guo, Yi-Fan
Huang, Yin-Hui
Li, Yuan-Zhe
author_facet Wang, Yi
Li, Shu-Ting
Huang, Jing
Lai, Qing-Quan
Guo, Yi-Fan
Huang, Yin-Hui
Li, Yuan-Zhe
author_sort Wang, Yi
collection PubMed
description BACKGROUND AND OBJECTIVE: In today's society, people's work pressure, coupled with irregular diet, lack of exercise and other bad lifestyle, resulting in frequent cardiovascular diseases. Medical imaging has made great progress in modern society, among which the role of MRI in cardiovascular field is self-evident. Based on this research background, how to process cardiac MRI quickly and accurately by computer has been extensively discussed. By comparing and analyzing several traditional image segmentation and deep learning image segmentation, this paper proposes the left and right atria segmentation algorithm of cardiac MRI based on UU-NET network. METHODS: In this paper, an atrial segmentation algorithm for cardiac MRI images in UU-NET network is proposed. Firstly, U-shaped upper and lower sampling modules are constructed by using residual theory, which are used as encoders and decoders of the model. Then, the modules are interconnected to form multiple paths from input to output to increase the information transmission capacity of the model. RESULTS: The segmentation method based on UU-NET network has achieved good results proposed in this paper, compared with the current mainstream image segmentation algorithm results have been improved to a certain extent. Through the analysis of the experimental results, the image segmentation algorithm based on UU-NET network on the data set, its performance in the verification set and online set is higher than other grid models. The DSC in the verification set is 96.7%, and the DSC in the online set is 96.7%, which is nearly one percentage point higher than the deconvolution neural network model. The hausdorff distance (HD) is 1.2 mm. Compared with other deep learning models, it is significantly improved (about 3 mm error is reduced), and the time is 0.4 min. CONCLUSION: The segmentation algorithm based on UU-NET improves the segmentation accuracy obviously compared with other segmentation models. Our technique will be able to help diagnose and treat cardiac complications.
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spelling pubmed-97312852022-12-09 Cardiac MRI segmentation of the atria based on UU-NET Wang, Yi Li, Shu-Ting Huang, Jing Lai, Qing-Quan Guo, Yi-Fan Huang, Yin-Hui Li, Yuan-Zhe Front Cardiovasc Med Cardiovascular Medicine BACKGROUND AND OBJECTIVE: In today's society, people's work pressure, coupled with irregular diet, lack of exercise and other bad lifestyle, resulting in frequent cardiovascular diseases. Medical imaging has made great progress in modern society, among which the role of MRI in cardiovascular field is self-evident. Based on this research background, how to process cardiac MRI quickly and accurately by computer has been extensively discussed. By comparing and analyzing several traditional image segmentation and deep learning image segmentation, this paper proposes the left and right atria segmentation algorithm of cardiac MRI based on UU-NET network. METHODS: In this paper, an atrial segmentation algorithm for cardiac MRI images in UU-NET network is proposed. Firstly, U-shaped upper and lower sampling modules are constructed by using residual theory, which are used as encoders and decoders of the model. Then, the modules are interconnected to form multiple paths from input to output to increase the information transmission capacity of the model. RESULTS: The segmentation method based on UU-NET network has achieved good results proposed in this paper, compared with the current mainstream image segmentation algorithm results have been improved to a certain extent. Through the analysis of the experimental results, the image segmentation algorithm based on UU-NET network on the data set, its performance in the verification set and online set is higher than other grid models. The DSC in the verification set is 96.7%, and the DSC in the online set is 96.7%, which is nearly one percentage point higher than the deconvolution neural network model. The hausdorff distance (HD) is 1.2 mm. Compared with other deep learning models, it is significantly improved (about 3 mm error is reduced), and the time is 0.4 min. CONCLUSION: The segmentation algorithm based on UU-NET improves the segmentation accuracy obviously compared with other segmentation models. Our technique will be able to help diagnose and treat cardiac complications. Frontiers Media S.A. 2022-11-24 /pmc/articles/PMC9731285/ /pubmed/36505371 http://dx.doi.org/10.3389/fcvm.2022.1011916 Text en Copyright © 2022 Wang, Li, Huang, Lai, Guo, Huang and Li. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cardiovascular Medicine
Wang, Yi
Li, Shu-Ting
Huang, Jing
Lai, Qing-Quan
Guo, Yi-Fan
Huang, Yin-Hui
Li, Yuan-Zhe
Cardiac MRI segmentation of the atria based on UU-NET
title Cardiac MRI segmentation of the atria based on UU-NET
title_full Cardiac MRI segmentation of the atria based on UU-NET
title_fullStr Cardiac MRI segmentation of the atria based on UU-NET
title_full_unstemmed Cardiac MRI segmentation of the atria based on UU-NET
title_short Cardiac MRI segmentation of the atria based on UU-NET
title_sort cardiac mri segmentation of the atria based on uu-net
topic Cardiovascular Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9731285/
https://www.ncbi.nlm.nih.gov/pubmed/36505371
http://dx.doi.org/10.3389/fcvm.2022.1011916
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