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Predicting 180-day mortality for women with ovarian cancer using machine learning and patient-reported outcome data
Contrary to national guidelines, women with ovarian cancer often receive treatment at the end of life, potentially due to the difficulty in accurately estimating prognosis. We trained machine learning algorithms to guide prognosis by predicting 180-day mortality for women with ovarian cancer using p...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9732183/ https://www.ncbi.nlm.nih.gov/pubmed/36481644 http://dx.doi.org/10.1038/s41598-022-22614-1 |
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author | Sidey-Gibbons, Chris J. Sun, Charlotte Schneider, Amy Lu, Sheng-Chieh Lu, Karen Wright, Alexi Meyer, Larissa |
author_facet | Sidey-Gibbons, Chris J. Sun, Charlotte Schneider, Amy Lu, Sheng-Chieh Lu, Karen Wright, Alexi Meyer, Larissa |
author_sort | Sidey-Gibbons, Chris J. |
collection | PubMed |
description | Contrary to national guidelines, women with ovarian cancer often receive treatment at the end of life, potentially due to the difficulty in accurately estimating prognosis. We trained machine learning algorithms to guide prognosis by predicting 180-day mortality for women with ovarian cancer using patient-reported outcomes (PRO) data. We collected data from a single academic cancer institution in the United States. Women completed biopsychosocial PRO measures every 90 days. We randomly partitioned our dataset into training and testing samples. We used synthetic minority oversampling to reduce class imbalance in the training dataset. We fitted training data to six machine learning algorithms and combined their classifications on the testing dataset into an unweighted voting ensemble. We assessed each algorithm's accuracy, sensitivity, specificity, and area under the receiver operating characteristic curve (AUROC) using testing data. We recruited 245 patients who completed 1319 PRO assessments. The final voting ensemble produced state-of-the-art results on the task of predicting 180-day mortality for ovarian cancer paitents (Accuracy = 0.79, Sensitivity = 0.71, Specificity = 0.80, AUROC = 0.76). The algorithm correctly identified 25 of the 35 women in the testing dataset who died within 180 days of assessment. Machine learning algorithms trained using PRO data offer encouraging performance in predicting whether a woman with ovarian cancer will die within 180 days. This model could be used to drive data-driven end-of-life care and address current shortcomings in care delivery. Our model demonstrates the potential of biopsychosocial PROM information to make substantial contributions to oncology prediction modeling. This model could inform clinical decision-making Future research is needed to validate these findings in a larger, more diverse sample. |
format | Online Article Text |
id | pubmed-9732183 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-97321832022-12-10 Predicting 180-day mortality for women with ovarian cancer using machine learning and patient-reported outcome data Sidey-Gibbons, Chris J. Sun, Charlotte Schneider, Amy Lu, Sheng-Chieh Lu, Karen Wright, Alexi Meyer, Larissa Sci Rep Article Contrary to national guidelines, women with ovarian cancer often receive treatment at the end of life, potentially due to the difficulty in accurately estimating prognosis. We trained machine learning algorithms to guide prognosis by predicting 180-day mortality for women with ovarian cancer using patient-reported outcomes (PRO) data. We collected data from a single academic cancer institution in the United States. Women completed biopsychosocial PRO measures every 90 days. We randomly partitioned our dataset into training and testing samples. We used synthetic minority oversampling to reduce class imbalance in the training dataset. We fitted training data to six machine learning algorithms and combined their classifications on the testing dataset into an unweighted voting ensemble. We assessed each algorithm's accuracy, sensitivity, specificity, and area under the receiver operating characteristic curve (AUROC) using testing data. We recruited 245 patients who completed 1319 PRO assessments. The final voting ensemble produced state-of-the-art results on the task of predicting 180-day mortality for ovarian cancer paitents (Accuracy = 0.79, Sensitivity = 0.71, Specificity = 0.80, AUROC = 0.76). The algorithm correctly identified 25 of the 35 women in the testing dataset who died within 180 days of assessment. Machine learning algorithms trained using PRO data offer encouraging performance in predicting whether a woman with ovarian cancer will die within 180 days. This model could be used to drive data-driven end-of-life care and address current shortcomings in care delivery. Our model demonstrates the potential of biopsychosocial PROM information to make substantial contributions to oncology prediction modeling. This model could inform clinical decision-making Future research is needed to validate these findings in a larger, more diverse sample. Nature Publishing Group UK 2022-12-08 /pmc/articles/PMC9732183/ /pubmed/36481644 http://dx.doi.org/10.1038/s41598-022-22614-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Sidey-Gibbons, Chris J. Sun, Charlotte Schneider, Amy Lu, Sheng-Chieh Lu, Karen Wright, Alexi Meyer, Larissa Predicting 180-day mortality for women with ovarian cancer using machine learning and patient-reported outcome data |
title | Predicting 180-day mortality for women with ovarian cancer using machine learning and patient-reported outcome data |
title_full | Predicting 180-day mortality for women with ovarian cancer using machine learning and patient-reported outcome data |
title_fullStr | Predicting 180-day mortality for women with ovarian cancer using machine learning and patient-reported outcome data |
title_full_unstemmed | Predicting 180-day mortality for women with ovarian cancer using machine learning and patient-reported outcome data |
title_short | Predicting 180-day mortality for women with ovarian cancer using machine learning and patient-reported outcome data |
title_sort | predicting 180-day mortality for women with ovarian cancer using machine learning and patient-reported outcome data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9732183/ https://www.ncbi.nlm.nih.gov/pubmed/36481644 http://dx.doi.org/10.1038/s41598-022-22614-1 |
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