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Prognostic necroptosis-related gene signature aids immunotherapy in lung adenocarcinoma
Background: Necroptosis is a phenomenon of cellular necrosis resulting from cell membrane rupture by the corresponding activation of Receptor Interacting Protein Kinase 3 (RIPK3) and Mixed Lineage Kinase domain-Like protein (MLKL) under programmed regulation. It is reported that necroptosis is close...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9732465/ https://www.ncbi.nlm.nih.gov/pubmed/36506314 http://dx.doi.org/10.3389/fgene.2022.1027741 |
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author | Song, Yuqi Zhang, Jinming Fang, Linan Liu, Wei |
author_facet | Song, Yuqi Zhang, Jinming Fang, Linan Liu, Wei |
author_sort | Song, Yuqi |
collection | PubMed |
description | Background: Necroptosis is a phenomenon of cellular necrosis resulting from cell membrane rupture by the corresponding activation of Receptor Interacting Protein Kinase 3 (RIPK3) and Mixed Lineage Kinase domain-Like protein (MLKL) under programmed regulation. It is reported that necroptosis is closely related to the development of tumors, but the prognostic role and biological function of necroptosis in lung adenocarcinoma (LUAD), the most important cause of cancer-related deaths, is still obscure. Methods: In this study, we constructed a prognostic Necroptosis-related gene signature based on the RNA transcription data of LUAD patients from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases as well as the corresponding clinical information. Kaplan-Meier analysis, receiver operating characteristic (ROC), and Cox regression were made to validate and evaluate the model. We analyzed the immune landscape in LUAD and the relationship between the signature and immunotherapy regimens. Results: Five genes (RIPK3, MLKL, TLR2, TNFRSF1A, and ALDH2) were used to construct the prognostic signature, and patients were divided into high and low-risk groups in line with the risk score. Cox regression showed that risk score was an independent prognostic factor. Nomogram was created for predicting the survival rate of LUAD patients. Patients in high and low-risk groups have different tumor purity, tumor immunogenicity, and different sensitivity to common antitumor drugs. Conclusion: Our results highlight the association of necroptosis with LUAD and its potential use in guiding immunotherapy. |
format | Online Article Text |
id | pubmed-9732465 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97324652022-12-10 Prognostic necroptosis-related gene signature aids immunotherapy in lung adenocarcinoma Song, Yuqi Zhang, Jinming Fang, Linan Liu, Wei Front Genet Genetics Background: Necroptosis is a phenomenon of cellular necrosis resulting from cell membrane rupture by the corresponding activation of Receptor Interacting Protein Kinase 3 (RIPK3) and Mixed Lineage Kinase domain-Like protein (MLKL) under programmed regulation. It is reported that necroptosis is closely related to the development of tumors, but the prognostic role and biological function of necroptosis in lung adenocarcinoma (LUAD), the most important cause of cancer-related deaths, is still obscure. Methods: In this study, we constructed a prognostic Necroptosis-related gene signature based on the RNA transcription data of LUAD patients from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases as well as the corresponding clinical information. Kaplan-Meier analysis, receiver operating characteristic (ROC), and Cox regression were made to validate and evaluate the model. We analyzed the immune landscape in LUAD and the relationship between the signature and immunotherapy regimens. Results: Five genes (RIPK3, MLKL, TLR2, TNFRSF1A, and ALDH2) were used to construct the prognostic signature, and patients were divided into high and low-risk groups in line with the risk score. Cox regression showed that risk score was an independent prognostic factor. Nomogram was created for predicting the survival rate of LUAD patients. Patients in high and low-risk groups have different tumor purity, tumor immunogenicity, and different sensitivity to common antitumor drugs. Conclusion: Our results highlight the association of necroptosis with LUAD and its potential use in guiding immunotherapy. Frontiers Media S.A. 2022-11-25 /pmc/articles/PMC9732465/ /pubmed/36506314 http://dx.doi.org/10.3389/fgene.2022.1027741 Text en Copyright © 2022 Song, Zhang, Fang and Liu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Song, Yuqi Zhang, Jinming Fang, Linan Liu, Wei Prognostic necroptosis-related gene signature aids immunotherapy in lung adenocarcinoma |
title | Prognostic necroptosis-related gene signature aids immunotherapy in lung adenocarcinoma |
title_full | Prognostic necroptosis-related gene signature aids immunotherapy in lung adenocarcinoma |
title_fullStr | Prognostic necroptosis-related gene signature aids immunotherapy in lung adenocarcinoma |
title_full_unstemmed | Prognostic necroptosis-related gene signature aids immunotherapy in lung adenocarcinoma |
title_short | Prognostic necroptosis-related gene signature aids immunotherapy in lung adenocarcinoma |
title_sort | prognostic necroptosis-related gene signature aids immunotherapy in lung adenocarcinoma |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9732465/ https://www.ncbi.nlm.nih.gov/pubmed/36506314 http://dx.doi.org/10.3389/fgene.2022.1027741 |
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