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Fibroblast growth factor 2 is a druggable target against glioblastoma: A computational investigation

Fibroblast growth factor 2 (FGF2) is a key player in cancer and tissue homeostasis and regulates renewal of several stem cell types. The FGF2 role in malignant glioma is proven and tagged FGF2, a novel druggable target, is used for developing potent drugs against glioblastoma. In this study, Asinex...

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Autores principales: Siddique, Rabeea, Abideen, Syed Ainul, Nabi, Ghulam, Awan, Faryal Mehwish, Noor Khan, Sadiq, Ullah, Fawad, Khan, Suliman, Xue, Mengzhou
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9732544/
https://www.ncbi.nlm.nih.gov/pubmed/36505741
http://dx.doi.org/10.3389/fchem.2022.1071929
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author Siddique, Rabeea
Abideen, Syed Ainul
Nabi, Ghulam
Awan, Faryal Mehwish
Noor Khan, Sadiq
Ullah, Fawad
Khan, Suliman
Xue, Mengzhou
author_facet Siddique, Rabeea
Abideen, Syed Ainul
Nabi, Ghulam
Awan, Faryal Mehwish
Noor Khan, Sadiq
Ullah, Fawad
Khan, Suliman
Xue, Mengzhou
author_sort Siddique, Rabeea
collection PubMed
description Fibroblast growth factor 2 (FGF2) is a key player in cancer and tissue homeostasis and regulates renewal of several stem cell types. The FGF2 role in malignant glioma is proven and tagged FGF2, a novel druggable target, is used for developing potent drugs against glioblastoma. In this study, Asinex 51412372, Asinex 51217461, and Asinex 51216586 were filtered to show the best binding affinity for FGF2 with binding energy scores of −8.3 kcal/mol, −8.2 kcal/mol, and −7.8 kcal/mol, respectively. The compounds showed chemical interactions with several vital residues of FGF2 along the compound length. The noticeable residues that interacted with the compounds were Arg15, Asp23, Arg63, and Gln105. In dynamic investigation in solution, the FGF2 reported unstable dynamics in the first 100 ns and gained structural equilibrium in the second phase of 100 ns. The maximum root mean square deviation (RMSD) value touched by the systems is 3 Å. Similarly, the residue flexibility of FGF2 in the presence of compounds was within a stable range and is compact along the simulation time length. The compounds showed robust atomic-level stable energies with FGF2, which are dominated by both van der Waals and electrostatic interactions. The net binding energy of systems varies between −40 kcal/mol and −86 kcal/mol, suggesting the formation of strong intermolecular docked complexes. The drug-likeness and pharmacokinetic properties also pointed toward good structures that are not toxic, have high gastric absorption, showed good distribution, and readily excreted from the body. In summary, the predicted compounds in this study might be ideal hits that might be further optimized for structure and activity during experimental studies.
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spelling pubmed-97325442022-12-10 Fibroblast growth factor 2 is a druggable target against glioblastoma: A computational investigation Siddique, Rabeea Abideen, Syed Ainul Nabi, Ghulam Awan, Faryal Mehwish Noor Khan, Sadiq Ullah, Fawad Khan, Suliman Xue, Mengzhou Front Chem Chemistry Fibroblast growth factor 2 (FGF2) is a key player in cancer and tissue homeostasis and regulates renewal of several stem cell types. The FGF2 role in malignant glioma is proven and tagged FGF2, a novel druggable target, is used for developing potent drugs against glioblastoma. In this study, Asinex 51412372, Asinex 51217461, and Asinex 51216586 were filtered to show the best binding affinity for FGF2 with binding energy scores of −8.3 kcal/mol, −8.2 kcal/mol, and −7.8 kcal/mol, respectively. The compounds showed chemical interactions with several vital residues of FGF2 along the compound length. The noticeable residues that interacted with the compounds were Arg15, Asp23, Arg63, and Gln105. In dynamic investigation in solution, the FGF2 reported unstable dynamics in the first 100 ns and gained structural equilibrium in the second phase of 100 ns. The maximum root mean square deviation (RMSD) value touched by the systems is 3 Å. Similarly, the residue flexibility of FGF2 in the presence of compounds was within a stable range and is compact along the simulation time length. The compounds showed robust atomic-level stable energies with FGF2, which are dominated by both van der Waals and electrostatic interactions. The net binding energy of systems varies between −40 kcal/mol and −86 kcal/mol, suggesting the formation of strong intermolecular docked complexes. The drug-likeness and pharmacokinetic properties also pointed toward good structures that are not toxic, have high gastric absorption, showed good distribution, and readily excreted from the body. In summary, the predicted compounds in this study might be ideal hits that might be further optimized for structure and activity during experimental studies. Frontiers Media S.A. 2022-11-25 /pmc/articles/PMC9732544/ /pubmed/36505741 http://dx.doi.org/10.3389/fchem.2022.1071929 Text en Copyright © 2022 Siddique, Abideen, Nabi, Awan, Noor Khan, Ullah, Khan and Xue. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Chemistry
Siddique, Rabeea
Abideen, Syed Ainul
Nabi, Ghulam
Awan, Faryal Mehwish
Noor Khan, Sadiq
Ullah, Fawad
Khan, Suliman
Xue, Mengzhou
Fibroblast growth factor 2 is a druggable target against glioblastoma: A computational investigation
title Fibroblast growth factor 2 is a druggable target against glioblastoma: A computational investigation
title_full Fibroblast growth factor 2 is a druggable target against glioblastoma: A computational investigation
title_fullStr Fibroblast growth factor 2 is a druggable target against glioblastoma: A computational investigation
title_full_unstemmed Fibroblast growth factor 2 is a druggable target against glioblastoma: A computational investigation
title_short Fibroblast growth factor 2 is a druggable target against glioblastoma: A computational investigation
title_sort fibroblast growth factor 2 is a druggable target against glioblastoma: a computational investigation
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9732544/
https://www.ncbi.nlm.nih.gov/pubmed/36505741
http://dx.doi.org/10.3389/fchem.2022.1071929
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