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Introduction to the shared near infrared spectroscopy format

SIGNIFICANCE: Functional near-infrared spectroscopy (fNIRS) is a popular neuroimaging technique with proliferating hardware platforms, analysis approaches, and software tools. There has not been a standardized file format for storing fNIRS data, which has hindered the sharing of data as well as the...

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Autores principales: Tucker, Stephen, Dubb, Jay, Kura, Sreekanth, von Lühmann, Alexander, Franke, Robert, Horschig, Jörn M., Powell, Samuel, Oostenveld, Robert, Lührs, Michael, Delaire, Édouard, Aghajan, Zahra M., Yun, Hanseok, Yücel, Meryem A., Fang, Qianqian, Huppert, Theodore J., Frederick, Blaise B., Pollonini, Luca, Boas, David, Luke, Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society of Photo-Optical Instrumentation Engineers 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9732807/
https://www.ncbi.nlm.nih.gov/pubmed/36507152
http://dx.doi.org/10.1117/1.NPh.10.1.013507
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author Tucker, Stephen
Dubb, Jay
Kura, Sreekanth
von Lühmann, Alexander
Franke, Robert
Horschig, Jörn M.
Powell, Samuel
Oostenveld, Robert
Lührs, Michael
Delaire, Édouard
Aghajan, Zahra M.
Yun, Hanseok
Yücel, Meryem A.
Fang, Qianqian
Huppert, Theodore J.
Frederick, Blaise B.
Pollonini, Luca
Boas, David
Luke, Robert
author_facet Tucker, Stephen
Dubb, Jay
Kura, Sreekanth
von Lühmann, Alexander
Franke, Robert
Horschig, Jörn M.
Powell, Samuel
Oostenveld, Robert
Lührs, Michael
Delaire, Édouard
Aghajan, Zahra M.
Yun, Hanseok
Yücel, Meryem A.
Fang, Qianqian
Huppert, Theodore J.
Frederick, Blaise B.
Pollonini, Luca
Boas, David
Luke, Robert
author_sort Tucker, Stephen
collection PubMed
description SIGNIFICANCE: Functional near-infrared spectroscopy (fNIRS) is a popular neuroimaging technique with proliferating hardware platforms, analysis approaches, and software tools. There has not been a standardized file format for storing fNIRS data, which has hindered the sharing of data as well as the adoption and development of software tools. AIM: We endeavored to design a file format to facilitate the analysis and sharing of fNIRS data that is flexible enough to meet the community’s needs and sufficiently defined to be implemented consistently across various hardware and software platforms. APPROACH: The shared NIRS format (SNIRF) specification was developed in consultation with the academic and commercial fNIRS community and the Society for functional Near Infrared Spectroscopy. RESULTS: The SNIRF specification defines a format for fNIRS data acquired using continuous wave, frequency domain, time domain, and diffuse correlation spectroscopy devices. CONCLUSIONS: We present the SNIRF along with validation software and example datasets. Support for reading and writing SNIRF data has been implemented by major hardware and software platforms, and the format has found widespread use in the fNIRS community.
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spelling pubmed-97328072022-12-09 Introduction to the shared near infrared spectroscopy format Tucker, Stephen Dubb, Jay Kura, Sreekanth von Lühmann, Alexander Franke, Robert Horschig, Jörn M. Powell, Samuel Oostenveld, Robert Lührs, Michael Delaire, Édouard Aghajan, Zahra M. Yun, Hanseok Yücel, Meryem A. Fang, Qianqian Huppert, Theodore J. Frederick, Blaise B. Pollonini, Luca Boas, David Luke, Robert Neurophotonics Special Section Celebrating 30 Years of Functional Near Infrared Spectroscopy (Part I) SIGNIFICANCE: Functional near-infrared spectroscopy (fNIRS) is a popular neuroimaging technique with proliferating hardware platforms, analysis approaches, and software tools. There has not been a standardized file format for storing fNIRS data, which has hindered the sharing of data as well as the adoption and development of software tools. AIM: We endeavored to design a file format to facilitate the analysis and sharing of fNIRS data that is flexible enough to meet the community’s needs and sufficiently defined to be implemented consistently across various hardware and software platforms. APPROACH: The shared NIRS format (SNIRF) specification was developed in consultation with the academic and commercial fNIRS community and the Society for functional Near Infrared Spectroscopy. RESULTS: The SNIRF specification defines a format for fNIRS data acquired using continuous wave, frequency domain, time domain, and diffuse correlation spectroscopy devices. CONCLUSIONS: We present the SNIRF along with validation software and example datasets. Support for reading and writing SNIRF data has been implemented by major hardware and software platforms, and the format has found widespread use in the fNIRS community. Society of Photo-Optical Instrumentation Engineers 2022-12-09 2023-01 /pmc/articles/PMC9732807/ /pubmed/36507152 http://dx.doi.org/10.1117/1.NPh.10.1.013507 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.
spellingShingle Special Section Celebrating 30 Years of Functional Near Infrared Spectroscopy (Part I)
Tucker, Stephen
Dubb, Jay
Kura, Sreekanth
von Lühmann, Alexander
Franke, Robert
Horschig, Jörn M.
Powell, Samuel
Oostenveld, Robert
Lührs, Michael
Delaire, Édouard
Aghajan, Zahra M.
Yun, Hanseok
Yücel, Meryem A.
Fang, Qianqian
Huppert, Theodore J.
Frederick, Blaise B.
Pollonini, Luca
Boas, David
Luke, Robert
Introduction to the shared near infrared spectroscopy format
title Introduction to the shared near infrared spectroscopy format
title_full Introduction to the shared near infrared spectroscopy format
title_fullStr Introduction to the shared near infrared spectroscopy format
title_full_unstemmed Introduction to the shared near infrared spectroscopy format
title_short Introduction to the shared near infrared spectroscopy format
title_sort introduction to the shared near infrared spectroscopy format
topic Special Section Celebrating 30 Years of Functional Near Infrared Spectroscopy (Part I)
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9732807/
https://www.ncbi.nlm.nih.gov/pubmed/36507152
http://dx.doi.org/10.1117/1.NPh.10.1.013507
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