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Introduction to the shared near infrared spectroscopy format
SIGNIFICANCE: Functional near-infrared spectroscopy (fNIRS) is a popular neuroimaging technique with proliferating hardware platforms, analysis approaches, and software tools. There has not been a standardized file format for storing fNIRS data, which has hindered the sharing of data as well as the...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society of Photo-Optical Instrumentation Engineers
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9732807/ https://www.ncbi.nlm.nih.gov/pubmed/36507152 http://dx.doi.org/10.1117/1.NPh.10.1.013507 |
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author | Tucker, Stephen Dubb, Jay Kura, Sreekanth von Lühmann, Alexander Franke, Robert Horschig, Jörn M. Powell, Samuel Oostenveld, Robert Lührs, Michael Delaire, Édouard Aghajan, Zahra M. Yun, Hanseok Yücel, Meryem A. Fang, Qianqian Huppert, Theodore J. Frederick, Blaise B. Pollonini, Luca Boas, David Luke, Robert |
author_facet | Tucker, Stephen Dubb, Jay Kura, Sreekanth von Lühmann, Alexander Franke, Robert Horschig, Jörn M. Powell, Samuel Oostenveld, Robert Lührs, Michael Delaire, Édouard Aghajan, Zahra M. Yun, Hanseok Yücel, Meryem A. Fang, Qianqian Huppert, Theodore J. Frederick, Blaise B. Pollonini, Luca Boas, David Luke, Robert |
author_sort | Tucker, Stephen |
collection | PubMed |
description | SIGNIFICANCE: Functional near-infrared spectroscopy (fNIRS) is a popular neuroimaging technique with proliferating hardware platforms, analysis approaches, and software tools. There has not been a standardized file format for storing fNIRS data, which has hindered the sharing of data as well as the adoption and development of software tools. AIM: We endeavored to design a file format to facilitate the analysis and sharing of fNIRS data that is flexible enough to meet the community’s needs and sufficiently defined to be implemented consistently across various hardware and software platforms. APPROACH: The shared NIRS format (SNIRF) specification was developed in consultation with the academic and commercial fNIRS community and the Society for functional Near Infrared Spectroscopy. RESULTS: The SNIRF specification defines a format for fNIRS data acquired using continuous wave, frequency domain, time domain, and diffuse correlation spectroscopy devices. CONCLUSIONS: We present the SNIRF along with validation software and example datasets. Support for reading and writing SNIRF data has been implemented by major hardware and software platforms, and the format has found widespread use in the fNIRS community. |
format | Online Article Text |
id | pubmed-9732807 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Society of Photo-Optical Instrumentation Engineers |
record_format | MEDLINE/PubMed |
spelling | pubmed-97328072022-12-09 Introduction to the shared near infrared spectroscopy format Tucker, Stephen Dubb, Jay Kura, Sreekanth von Lühmann, Alexander Franke, Robert Horschig, Jörn M. Powell, Samuel Oostenveld, Robert Lührs, Michael Delaire, Édouard Aghajan, Zahra M. Yun, Hanseok Yücel, Meryem A. Fang, Qianqian Huppert, Theodore J. Frederick, Blaise B. Pollonini, Luca Boas, David Luke, Robert Neurophotonics Special Section Celebrating 30 Years of Functional Near Infrared Spectroscopy (Part I) SIGNIFICANCE: Functional near-infrared spectroscopy (fNIRS) is a popular neuroimaging technique with proliferating hardware platforms, analysis approaches, and software tools. There has not been a standardized file format for storing fNIRS data, which has hindered the sharing of data as well as the adoption and development of software tools. AIM: We endeavored to design a file format to facilitate the analysis and sharing of fNIRS data that is flexible enough to meet the community’s needs and sufficiently defined to be implemented consistently across various hardware and software platforms. APPROACH: The shared NIRS format (SNIRF) specification was developed in consultation with the academic and commercial fNIRS community and the Society for functional Near Infrared Spectroscopy. RESULTS: The SNIRF specification defines a format for fNIRS data acquired using continuous wave, frequency domain, time domain, and diffuse correlation spectroscopy devices. CONCLUSIONS: We present the SNIRF along with validation software and example datasets. Support for reading and writing SNIRF data has been implemented by major hardware and software platforms, and the format has found widespread use in the fNIRS community. Society of Photo-Optical Instrumentation Engineers 2022-12-09 2023-01 /pmc/articles/PMC9732807/ /pubmed/36507152 http://dx.doi.org/10.1117/1.NPh.10.1.013507 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI. |
spellingShingle | Special Section Celebrating 30 Years of Functional Near Infrared Spectroscopy (Part I) Tucker, Stephen Dubb, Jay Kura, Sreekanth von Lühmann, Alexander Franke, Robert Horschig, Jörn M. Powell, Samuel Oostenveld, Robert Lührs, Michael Delaire, Édouard Aghajan, Zahra M. Yun, Hanseok Yücel, Meryem A. Fang, Qianqian Huppert, Theodore J. Frederick, Blaise B. Pollonini, Luca Boas, David Luke, Robert Introduction to the shared near infrared spectroscopy format |
title | Introduction to the shared near infrared spectroscopy format |
title_full | Introduction to the shared near infrared spectroscopy format |
title_fullStr | Introduction to the shared near infrared spectroscopy format |
title_full_unstemmed | Introduction to the shared near infrared spectroscopy format |
title_short | Introduction to the shared near infrared spectroscopy format |
title_sort | introduction to the shared near infrared spectroscopy format |
topic | Special Section Celebrating 30 Years of Functional Near Infrared Spectroscopy (Part I) |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9732807/ https://www.ncbi.nlm.nih.gov/pubmed/36507152 http://dx.doi.org/10.1117/1.NPh.10.1.013507 |
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