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Legacies of domestication, Neolithic diffusion and trade between Indian subcontinent and Island Southeast Asia shape maternal genetic diversity of Andaman cattle

Andaman cattle is a precious indigenous livestock species endemic to Andaman and Nicobar Islands, India. Till date, origin and genetic makeup of the breed which is warranted for breed conservation is not known. Moreover, the spread of zebu cattle from Indus valley to different parts of Island Southe...

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Autores principales: De, Arun Kumar, Sawhney, Sneha, Muthiyan, Ramachandran, Bhattacharya, Debasis, Ponraj, Perumal, Malakar, Dhruba, Sunder, Jai, Sujatha, T., Kumar, Ashish, Mondal, Samiran, Bera, Asit Kumar, Bala, P. A., Chakurkar, Eaknath B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9733863/
https://www.ncbi.nlm.nih.gov/pubmed/36490290
http://dx.doi.org/10.1371/journal.pone.0278681
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author De, Arun Kumar
Sawhney, Sneha
Muthiyan, Ramachandran
Bhattacharya, Debasis
Ponraj, Perumal
Malakar, Dhruba
Sunder, Jai
Sujatha, T.
Kumar, Ashish
Mondal, Samiran
Bera, Asit Kumar
Bala, P. A.
Chakurkar, Eaknath B.
author_facet De, Arun Kumar
Sawhney, Sneha
Muthiyan, Ramachandran
Bhattacharya, Debasis
Ponraj, Perumal
Malakar, Dhruba
Sunder, Jai
Sujatha, T.
Kumar, Ashish
Mondal, Samiran
Bera, Asit Kumar
Bala, P. A.
Chakurkar, Eaknath B.
author_sort De, Arun Kumar
collection PubMed
description Andaman cattle is a precious indigenous livestock species endemic to Andaman and Nicobar Islands, India. Till date, origin and genetic makeup of the breed which is warranted for breed conservation is not known. Moreover, the spread of zebu cattle from Indus valley to different parts of Island Southeast Asia (ISEA) is not properly understood. Here, we report the genetic diversity, population structure of Andaman cattle and their evolution in the context of epicentre of zebu domestication and ISEA. High genetic diversity in complete mitochondrial D-loop sequences indicated the ability of the breed to withstand impending climate change. Total 81 haplotypes were detected and all of them except three belonged to Bos indicus. The presence of taurine haplotypes in Andaman cattle indicate introgression by European-derived cattle. A poor phylogenetic signal of Andaman cattle with genetic affinities with cattle of Indian subcontinent and ISEA was observed. The poor phylogenetic structure may be due to multidirectional gene flow from Indian subcontinent and ISEA, with which Andaman shares a close cultural and trade relationship from Neolithic age. We hypothesize that Andaman cattle is the outcome of Neolithic diffusion from centre of zebu domestication along with multidirectional commercial exchange between Indian subcontinent and ISEA.
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spelling pubmed-97338632022-12-10 Legacies of domestication, Neolithic diffusion and trade between Indian subcontinent and Island Southeast Asia shape maternal genetic diversity of Andaman cattle De, Arun Kumar Sawhney, Sneha Muthiyan, Ramachandran Bhattacharya, Debasis Ponraj, Perumal Malakar, Dhruba Sunder, Jai Sujatha, T. Kumar, Ashish Mondal, Samiran Bera, Asit Kumar Bala, P. A. Chakurkar, Eaknath B. PLoS One Research Article Andaman cattle is a precious indigenous livestock species endemic to Andaman and Nicobar Islands, India. Till date, origin and genetic makeup of the breed which is warranted for breed conservation is not known. Moreover, the spread of zebu cattle from Indus valley to different parts of Island Southeast Asia (ISEA) is not properly understood. Here, we report the genetic diversity, population structure of Andaman cattle and their evolution in the context of epicentre of zebu domestication and ISEA. High genetic diversity in complete mitochondrial D-loop sequences indicated the ability of the breed to withstand impending climate change. Total 81 haplotypes were detected and all of them except three belonged to Bos indicus. The presence of taurine haplotypes in Andaman cattle indicate introgression by European-derived cattle. A poor phylogenetic signal of Andaman cattle with genetic affinities with cattle of Indian subcontinent and ISEA was observed. The poor phylogenetic structure may be due to multidirectional gene flow from Indian subcontinent and ISEA, with which Andaman shares a close cultural and trade relationship from Neolithic age. We hypothesize that Andaman cattle is the outcome of Neolithic diffusion from centre of zebu domestication along with multidirectional commercial exchange between Indian subcontinent and ISEA. Public Library of Science 2022-12-09 /pmc/articles/PMC9733863/ /pubmed/36490290 http://dx.doi.org/10.1371/journal.pone.0278681 Text en © 2022 De et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
De, Arun Kumar
Sawhney, Sneha
Muthiyan, Ramachandran
Bhattacharya, Debasis
Ponraj, Perumal
Malakar, Dhruba
Sunder, Jai
Sujatha, T.
Kumar, Ashish
Mondal, Samiran
Bera, Asit Kumar
Bala, P. A.
Chakurkar, Eaknath B.
Legacies of domestication, Neolithic diffusion and trade between Indian subcontinent and Island Southeast Asia shape maternal genetic diversity of Andaman cattle
title Legacies of domestication, Neolithic diffusion and trade between Indian subcontinent and Island Southeast Asia shape maternal genetic diversity of Andaman cattle
title_full Legacies of domestication, Neolithic diffusion and trade between Indian subcontinent and Island Southeast Asia shape maternal genetic diversity of Andaman cattle
title_fullStr Legacies of domestication, Neolithic diffusion and trade between Indian subcontinent and Island Southeast Asia shape maternal genetic diversity of Andaman cattle
title_full_unstemmed Legacies of domestication, Neolithic diffusion and trade between Indian subcontinent and Island Southeast Asia shape maternal genetic diversity of Andaman cattle
title_short Legacies of domestication, Neolithic diffusion and trade between Indian subcontinent and Island Southeast Asia shape maternal genetic diversity of Andaman cattle
title_sort legacies of domestication, neolithic diffusion and trade between indian subcontinent and island southeast asia shape maternal genetic diversity of andaman cattle
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9733863/
https://www.ncbi.nlm.nih.gov/pubmed/36490290
http://dx.doi.org/10.1371/journal.pone.0278681
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