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Comprehensive pan-cancer genomic landscape of KRAS altered cancers and real-world outcomes in solid tumors

Recent clinical development of KRAS inhibitors has heightened interest in the genomic landscape of KRAS-altered cancers. We performed a pan-cancer analysis of KRAS-altered samples from 426,706 adult patients with solid or hematologic malignancies using comprehensive genomic profiling; additional ana...

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Autores principales: Lee, Jessica K., Sivakumar, Smruthy, Schrock, Alexa B., Madison, Russell, Fabrizio, David, Gjoerup, Ole, Ross, Jeffrey S., Frampton, Garrett M., Napalkov, Pavel, Montesion, Meagan, Schutzman, Jennifer L., Ye, Xin, Hegde, Priti S., Nagasaka, Misako, Oxnard, Geoffrey R., Sokol, Ethan S., Ou, Sai-Hong Ignatius, Shi, Zhen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9734185/
https://www.ncbi.nlm.nih.gov/pubmed/36494601
http://dx.doi.org/10.1038/s41698-022-00334-z
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author Lee, Jessica K.
Sivakumar, Smruthy
Schrock, Alexa B.
Madison, Russell
Fabrizio, David
Gjoerup, Ole
Ross, Jeffrey S.
Frampton, Garrett M.
Napalkov, Pavel
Montesion, Meagan
Schutzman, Jennifer L.
Ye, Xin
Hegde, Priti S.
Nagasaka, Misako
Oxnard, Geoffrey R.
Sokol, Ethan S.
Ou, Sai-Hong Ignatius
Shi, Zhen
author_facet Lee, Jessica K.
Sivakumar, Smruthy
Schrock, Alexa B.
Madison, Russell
Fabrizio, David
Gjoerup, Ole
Ross, Jeffrey S.
Frampton, Garrett M.
Napalkov, Pavel
Montesion, Meagan
Schutzman, Jennifer L.
Ye, Xin
Hegde, Priti S.
Nagasaka, Misako
Oxnard, Geoffrey R.
Sokol, Ethan S.
Ou, Sai-Hong Ignatius
Shi, Zhen
author_sort Lee, Jessica K.
collection PubMed
description Recent clinical development of KRAS inhibitors has heightened interest in the genomic landscape of KRAS-altered cancers. We performed a pan-cancer analysis of KRAS-altered samples from 426,706 adult patients with solid or hematologic malignancies using comprehensive genomic profiling; additional analyses included 62,369 liquid biopsy and 7241 pediatric samples. 23% of adult pan-cancer samples had KRAS alterations; 88% were mutations, most commonly G12D/G12V/G12C/G13D/G12R, and prevalence was similar in liquid biopsies. Co-alteration landscapes were largely similar across KRAS mutations but distinct from KRAS wild-type, though differences were observed in some tumor types for tumor mutational burden, PD-L1 expression, microsatellite instability, and other mutational signatures. Prognosis of KRAS-mutant versus other genomic cohorts of lung, pancreatic, and colorectal cancer were assessed using a real-world clinicogenomic database. As specific KRAS inhibitors and combination therapeutic strategies are being developed, genomic profiling to understand co-alterations and other biomarkers that may modulate response to targeted or immunotherapies will be imperative.
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spelling pubmed-97341852022-12-11 Comprehensive pan-cancer genomic landscape of KRAS altered cancers and real-world outcomes in solid tumors Lee, Jessica K. Sivakumar, Smruthy Schrock, Alexa B. Madison, Russell Fabrizio, David Gjoerup, Ole Ross, Jeffrey S. Frampton, Garrett M. Napalkov, Pavel Montesion, Meagan Schutzman, Jennifer L. Ye, Xin Hegde, Priti S. Nagasaka, Misako Oxnard, Geoffrey R. Sokol, Ethan S. Ou, Sai-Hong Ignatius Shi, Zhen NPJ Precis Oncol Article Recent clinical development of KRAS inhibitors has heightened interest in the genomic landscape of KRAS-altered cancers. We performed a pan-cancer analysis of KRAS-altered samples from 426,706 adult patients with solid or hematologic malignancies using comprehensive genomic profiling; additional analyses included 62,369 liquid biopsy and 7241 pediatric samples. 23% of adult pan-cancer samples had KRAS alterations; 88% were mutations, most commonly G12D/G12V/G12C/G13D/G12R, and prevalence was similar in liquid biopsies. Co-alteration landscapes were largely similar across KRAS mutations but distinct from KRAS wild-type, though differences were observed in some tumor types for tumor mutational burden, PD-L1 expression, microsatellite instability, and other mutational signatures. Prognosis of KRAS-mutant versus other genomic cohorts of lung, pancreatic, and colorectal cancer were assessed using a real-world clinicogenomic database. As specific KRAS inhibitors and combination therapeutic strategies are being developed, genomic profiling to understand co-alterations and other biomarkers that may modulate response to targeted or immunotherapies will be imperative. Nature Publishing Group UK 2022-12-09 /pmc/articles/PMC9734185/ /pubmed/36494601 http://dx.doi.org/10.1038/s41698-022-00334-z Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Lee, Jessica K.
Sivakumar, Smruthy
Schrock, Alexa B.
Madison, Russell
Fabrizio, David
Gjoerup, Ole
Ross, Jeffrey S.
Frampton, Garrett M.
Napalkov, Pavel
Montesion, Meagan
Schutzman, Jennifer L.
Ye, Xin
Hegde, Priti S.
Nagasaka, Misako
Oxnard, Geoffrey R.
Sokol, Ethan S.
Ou, Sai-Hong Ignatius
Shi, Zhen
Comprehensive pan-cancer genomic landscape of KRAS altered cancers and real-world outcomes in solid tumors
title Comprehensive pan-cancer genomic landscape of KRAS altered cancers and real-world outcomes in solid tumors
title_full Comprehensive pan-cancer genomic landscape of KRAS altered cancers and real-world outcomes in solid tumors
title_fullStr Comprehensive pan-cancer genomic landscape of KRAS altered cancers and real-world outcomes in solid tumors
title_full_unstemmed Comprehensive pan-cancer genomic landscape of KRAS altered cancers and real-world outcomes in solid tumors
title_short Comprehensive pan-cancer genomic landscape of KRAS altered cancers and real-world outcomes in solid tumors
title_sort comprehensive pan-cancer genomic landscape of kras altered cancers and real-world outcomes in solid tumors
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9734185/
https://www.ncbi.nlm.nih.gov/pubmed/36494601
http://dx.doi.org/10.1038/s41698-022-00334-z
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