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ApInAPDB: a database of apoptosis-inducing anticancer peptides

ApInAPDB (Apoptosis-Inducing Anticancer Peptides Database) consists of 818 apoptosis-inducing anticancer peptides which are manually collected from research articles. The database provides scholars with peptide related information such as function, binding target and affinity, IC50 and etc. In addit...

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Autores principales: Faraji, Naser, Arab, Seyed Shahriar, Doustmohammadi, Alireza, Daly, Norelle L., Khosroushahi, Ahmad Yari
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9734560/
https://www.ncbi.nlm.nih.gov/pubmed/36494486
http://dx.doi.org/10.1038/s41598-022-25530-6
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author Faraji, Naser
Arab, Seyed Shahriar
Doustmohammadi, Alireza
Daly, Norelle L.
Khosroushahi, Ahmad Yari
author_facet Faraji, Naser
Arab, Seyed Shahriar
Doustmohammadi, Alireza
Daly, Norelle L.
Khosroushahi, Ahmad Yari
author_sort Faraji, Naser
collection PubMed
description ApInAPDB (Apoptosis-Inducing Anticancer Peptides Database) consists of 818 apoptosis-inducing anticancer peptides which are manually collected from research articles. The database provides scholars with peptide related information such as function, binding target and affinity, IC50 and etc. In addition, GRAVY (grand average of hydropathy), net charge at pH 7, hydrophobicity and other physicochemical properties are calculated and presented. Another category of information are structural information includes 3D modeling, secondary structure prediction and descriptors for QSAR (quantitative structure–activity relationship) modeling. In order to facilitate the browsing process, three types of user-friendly searching tools are provided: top categories browser, simple search and advanced search. Overall ApInAPDB as the first database presenting apoptosis-inducing anticancer peptides can be useful in the field of peptide design and especially cancer therapy. Researchers can freely access the database at http://bioinf.modares.ac.ir/software/ApInAPDB/.
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spelling pubmed-97345602022-12-11 ApInAPDB: a database of apoptosis-inducing anticancer peptides Faraji, Naser Arab, Seyed Shahriar Doustmohammadi, Alireza Daly, Norelle L. Khosroushahi, Ahmad Yari Sci Rep Article ApInAPDB (Apoptosis-Inducing Anticancer Peptides Database) consists of 818 apoptosis-inducing anticancer peptides which are manually collected from research articles. The database provides scholars with peptide related information such as function, binding target and affinity, IC50 and etc. In addition, GRAVY (grand average of hydropathy), net charge at pH 7, hydrophobicity and other physicochemical properties are calculated and presented. Another category of information are structural information includes 3D modeling, secondary structure prediction and descriptors for QSAR (quantitative structure–activity relationship) modeling. In order to facilitate the browsing process, three types of user-friendly searching tools are provided: top categories browser, simple search and advanced search. Overall ApInAPDB as the first database presenting apoptosis-inducing anticancer peptides can be useful in the field of peptide design and especially cancer therapy. Researchers can freely access the database at http://bioinf.modares.ac.ir/software/ApInAPDB/. Nature Publishing Group UK 2022-12-09 /pmc/articles/PMC9734560/ /pubmed/36494486 http://dx.doi.org/10.1038/s41598-022-25530-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Faraji, Naser
Arab, Seyed Shahriar
Doustmohammadi, Alireza
Daly, Norelle L.
Khosroushahi, Ahmad Yari
ApInAPDB: a database of apoptosis-inducing anticancer peptides
title ApInAPDB: a database of apoptosis-inducing anticancer peptides
title_full ApInAPDB: a database of apoptosis-inducing anticancer peptides
title_fullStr ApInAPDB: a database of apoptosis-inducing anticancer peptides
title_full_unstemmed ApInAPDB: a database of apoptosis-inducing anticancer peptides
title_short ApInAPDB: a database of apoptosis-inducing anticancer peptides
title_sort apinapdb: a database of apoptosis-inducing anticancer peptides
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9734560/
https://www.ncbi.nlm.nih.gov/pubmed/36494486
http://dx.doi.org/10.1038/s41598-022-25530-6
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