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An Accurate Approach for Computational pKa Determination of Phenolic Compounds
Computational chemistry is a valuable tool, as it allows for in silico prediction of key parameters of novel compounds, such as pKa. In the framework of computational pKa determination, the literature offers several approaches based on different level of theories, functionals and continuum solvation...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9736058/ https://www.ncbi.nlm.nih.gov/pubmed/36500683 http://dx.doi.org/10.3390/molecules27238590 |
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author | Pezzola, Silvia Tarallo, Samuele Iannini, Alessandro Venanzi, Mariano Galloni, Pierluca Conte, Valeria Sabuzi, Federica |
author_facet | Pezzola, Silvia Tarallo, Samuele Iannini, Alessandro Venanzi, Mariano Galloni, Pierluca Conte, Valeria Sabuzi, Federica |
author_sort | Pezzola, Silvia |
collection | PubMed |
description | Computational chemistry is a valuable tool, as it allows for in silico prediction of key parameters of novel compounds, such as pKa. In the framework of computational pKa determination, the literature offers several approaches based on different level of theories, functionals and continuum solvation models. However, correction factors are often used to provide reliable models that adequately predict pKa. In this work, an accurate protocol based on a direct approach is proposed for computing phenols pKa. Importantly, this methodology does not require the use of correction factors or mathematical fitting, making it highly practical, easy to use and fast. Above all, DFT calculations performed in the presence two explicit water molecules using CAM-B3LYP functional with 6-311G+dp basis set and a solvation model based on density (SMD) led to accurate pKa values. In particular, calculations performed on a series of 13 differently substituted phenols provided reliable results, with a mean absolute error of 0.3. Furthermore, the model achieves accurate results with -CN and -NO(2) substituents, which are usually excluded from computational pKa studies, enabling easy and reliable pKa determination in a wide range of phenols. |
format | Online Article Text |
id | pubmed-9736058 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-97360582022-12-11 An Accurate Approach for Computational pKa Determination of Phenolic Compounds Pezzola, Silvia Tarallo, Samuele Iannini, Alessandro Venanzi, Mariano Galloni, Pierluca Conte, Valeria Sabuzi, Federica Molecules Article Computational chemistry is a valuable tool, as it allows for in silico prediction of key parameters of novel compounds, such as pKa. In the framework of computational pKa determination, the literature offers several approaches based on different level of theories, functionals and continuum solvation models. However, correction factors are often used to provide reliable models that adequately predict pKa. In this work, an accurate protocol based on a direct approach is proposed for computing phenols pKa. Importantly, this methodology does not require the use of correction factors or mathematical fitting, making it highly practical, easy to use and fast. Above all, DFT calculations performed in the presence two explicit water molecules using CAM-B3LYP functional with 6-311G+dp basis set and a solvation model based on density (SMD) led to accurate pKa values. In particular, calculations performed on a series of 13 differently substituted phenols provided reliable results, with a mean absolute error of 0.3. Furthermore, the model achieves accurate results with -CN and -NO(2) substituents, which are usually excluded from computational pKa studies, enabling easy and reliable pKa determination in a wide range of phenols. MDPI 2022-12-06 /pmc/articles/PMC9736058/ /pubmed/36500683 http://dx.doi.org/10.3390/molecules27238590 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Pezzola, Silvia Tarallo, Samuele Iannini, Alessandro Venanzi, Mariano Galloni, Pierluca Conte, Valeria Sabuzi, Federica An Accurate Approach for Computational pKa Determination of Phenolic Compounds |
title | An Accurate Approach for Computational pKa Determination of Phenolic Compounds |
title_full | An Accurate Approach for Computational pKa Determination of Phenolic Compounds |
title_fullStr | An Accurate Approach for Computational pKa Determination of Phenolic Compounds |
title_full_unstemmed | An Accurate Approach for Computational pKa Determination of Phenolic Compounds |
title_short | An Accurate Approach for Computational pKa Determination of Phenolic Compounds |
title_sort | accurate approach for computational pka determination of phenolic compounds |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9736058/ https://www.ncbi.nlm.nih.gov/pubmed/36500683 http://dx.doi.org/10.3390/molecules27238590 |
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