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An Accurate Approach for Computational pKa Determination of Phenolic Compounds

Computational chemistry is a valuable tool, as it allows for in silico prediction of key parameters of novel compounds, such as pKa. In the framework of computational pKa determination, the literature offers several approaches based on different level of theories, functionals and continuum solvation...

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Autores principales: Pezzola, Silvia, Tarallo, Samuele, Iannini, Alessandro, Venanzi, Mariano, Galloni, Pierluca, Conte, Valeria, Sabuzi, Federica
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9736058/
https://www.ncbi.nlm.nih.gov/pubmed/36500683
http://dx.doi.org/10.3390/molecules27238590
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author Pezzola, Silvia
Tarallo, Samuele
Iannini, Alessandro
Venanzi, Mariano
Galloni, Pierluca
Conte, Valeria
Sabuzi, Federica
author_facet Pezzola, Silvia
Tarallo, Samuele
Iannini, Alessandro
Venanzi, Mariano
Galloni, Pierluca
Conte, Valeria
Sabuzi, Federica
author_sort Pezzola, Silvia
collection PubMed
description Computational chemistry is a valuable tool, as it allows for in silico prediction of key parameters of novel compounds, such as pKa. In the framework of computational pKa determination, the literature offers several approaches based on different level of theories, functionals and continuum solvation models. However, correction factors are often used to provide reliable models that adequately predict pKa. In this work, an accurate protocol based on a direct approach is proposed for computing phenols pKa. Importantly, this methodology does not require the use of correction factors or mathematical fitting, making it highly practical, easy to use and fast. Above all, DFT calculations performed in the presence two explicit water molecules using CAM-B3LYP functional with 6-311G+dp basis set and a solvation model based on density (SMD) led to accurate pKa values. In particular, calculations performed on a series of 13 differently substituted phenols provided reliable results, with a mean absolute error of 0.3. Furthermore, the model achieves accurate results with -CN and -NO(2) substituents, which are usually excluded from computational pKa studies, enabling easy and reliable pKa determination in a wide range of phenols.
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spelling pubmed-97360582022-12-11 An Accurate Approach for Computational pKa Determination of Phenolic Compounds Pezzola, Silvia Tarallo, Samuele Iannini, Alessandro Venanzi, Mariano Galloni, Pierluca Conte, Valeria Sabuzi, Federica Molecules Article Computational chemistry is a valuable tool, as it allows for in silico prediction of key parameters of novel compounds, such as pKa. In the framework of computational pKa determination, the literature offers several approaches based on different level of theories, functionals and continuum solvation models. However, correction factors are often used to provide reliable models that adequately predict pKa. In this work, an accurate protocol based on a direct approach is proposed for computing phenols pKa. Importantly, this methodology does not require the use of correction factors or mathematical fitting, making it highly practical, easy to use and fast. Above all, DFT calculations performed in the presence two explicit water molecules using CAM-B3LYP functional with 6-311G+dp basis set and a solvation model based on density (SMD) led to accurate pKa values. In particular, calculations performed on a series of 13 differently substituted phenols provided reliable results, with a mean absolute error of 0.3. Furthermore, the model achieves accurate results with -CN and -NO(2) substituents, which are usually excluded from computational pKa studies, enabling easy and reliable pKa determination in a wide range of phenols. MDPI 2022-12-06 /pmc/articles/PMC9736058/ /pubmed/36500683 http://dx.doi.org/10.3390/molecules27238590 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Pezzola, Silvia
Tarallo, Samuele
Iannini, Alessandro
Venanzi, Mariano
Galloni, Pierluca
Conte, Valeria
Sabuzi, Federica
An Accurate Approach for Computational pKa Determination of Phenolic Compounds
title An Accurate Approach for Computational pKa Determination of Phenolic Compounds
title_full An Accurate Approach for Computational pKa Determination of Phenolic Compounds
title_fullStr An Accurate Approach for Computational pKa Determination of Phenolic Compounds
title_full_unstemmed An Accurate Approach for Computational pKa Determination of Phenolic Compounds
title_short An Accurate Approach for Computational pKa Determination of Phenolic Compounds
title_sort accurate approach for computational pka determination of phenolic compounds
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9736058/
https://www.ncbi.nlm.nih.gov/pubmed/36500683
http://dx.doi.org/10.3390/molecules27238590
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