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Circulating Non-Coding RNA Levels Are Altered in Autosomal Dominant Frontotemporal Dementia

Frontotemporal Dementia (FTD) represents a highly heritable neurodegenerative disorder. Most of the heritability is caused by autosomal dominant mutations in the Microtubule-Associated Protein Tau (MAPT), Progranulin (GRN), and the pathologic exanucleotide expansion of C9ORF72 genes. At the patholog...

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Autores principales: Fenoglio, Chiara, Serpente, Maria, Visconte, Caterina, Arcaro, Marina, Sorrentino, Federica, D’Anca, Marianna, Arighi, Andrea, Rotondo, Emanuela, Vimercati, Roberto, Rossi, Giacomina, Scarpini, Elio, Galimberti, Daniela
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
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Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9737170/
https://www.ncbi.nlm.nih.gov/pubmed/36499048
http://dx.doi.org/10.3390/ijms232314723
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author Fenoglio, Chiara
Serpente, Maria
Visconte, Caterina
Arcaro, Marina
Sorrentino, Federica
D’Anca, Marianna
Arighi, Andrea
Rotondo, Emanuela
Vimercati, Roberto
Rossi, Giacomina
Scarpini, Elio
Galimberti, Daniela
author_facet Fenoglio, Chiara
Serpente, Maria
Visconte, Caterina
Arcaro, Marina
Sorrentino, Federica
D’Anca, Marianna
Arighi, Andrea
Rotondo, Emanuela
Vimercati, Roberto
Rossi, Giacomina
Scarpini, Elio
Galimberti, Daniela
author_sort Fenoglio, Chiara
collection PubMed
description Frontotemporal Dementia (FTD) represents a highly heritable neurodegenerative disorder. Most of the heritability is caused by autosomal dominant mutations in the Microtubule-Associated Protein Tau (MAPT), Progranulin (GRN), and the pathologic exanucleotide expansion of C9ORF72 genes. At the pathological level, either the tau or the TAR DNA-binding protein (TDP-43) account for almost all cases of FTD. Pathogenic mechanisms are just arising, and the emerging role of non-coding RNAs (ncRNAs), such as microRNAs (miRNA) and long non-coding RNAs (lncRNAs), have become increasingly evident. Using specific arrays, an exploratory analysis testing the expression levels of 84 miRNAs and 84 lncRNAs has been performed in a population consisting of 24 genetic FTD patients (eight GRN, eight C9ORF72, and eight MAPT mutation carriers), eight sporadic FTD patients, and eight healthy controls. The results showed a generalized ncRNA downregulation in patients carrying GRN and C9ORF72 when compared with the controls, with statistically significant results for the following miRNAs: miR-155-5p (Fold Change FC: 0.45, p = 0.037 FDR = 0.52), miR-15a-5p (FC: 0.13, p = 0.027, FDR = 1), miR-222-3p (FC: 0.13, p = 0.027, FDR = 0.778), miR-140-3p (FC: 0.096, p = 0.034, FRD = 0.593), miR-106b-5p (FC: 0.13, p = 0.02, FDR = 0.584) and an upregulation solely for miR-124-3p (FC: 2.1, p = 0.01, FDR = 0.893). Conversely, MAPT mutation carriers showed a generalized robust upregulation in several ncRNAs, specifically for miR-222-3p (FC: 22.3, p = 7 × 10(−6), FDR = 0.117), miR-15a-5p (FC: 30.2, p = 0.008, FDR = 0.145), miR-27a-3p (FC: 27.8, p = 6 × 10(−6), FDR = 0.0005), miR-223-3p (FC: 18.9, p = 0.005, FDR = 0.117), and miR-16-5p (FC: 10.9, p = 5.26 × 10(−5), FDR = 0.001). These results suggest a clear, distinctive pattern of dysregulation among ncRNAs and specific enrichment gene pathways between mutations associated with the TDP-43 and tau pathologies. Nevertheless, these preliminary results need to be confirmed in a larger independent cohort.
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spelling pubmed-97371702022-12-11 Circulating Non-Coding RNA Levels Are Altered in Autosomal Dominant Frontotemporal Dementia Fenoglio, Chiara Serpente, Maria Visconte, Caterina Arcaro, Marina Sorrentino, Federica D’Anca, Marianna Arighi, Andrea Rotondo, Emanuela Vimercati, Roberto Rossi, Giacomina Scarpini, Elio Galimberti, Daniela Int J Mol Sci Article Frontotemporal Dementia (FTD) represents a highly heritable neurodegenerative disorder. Most of the heritability is caused by autosomal dominant mutations in the Microtubule-Associated Protein Tau (MAPT), Progranulin (GRN), and the pathologic exanucleotide expansion of C9ORF72 genes. At the pathological level, either the tau or the TAR DNA-binding protein (TDP-43) account for almost all cases of FTD. Pathogenic mechanisms are just arising, and the emerging role of non-coding RNAs (ncRNAs), such as microRNAs (miRNA) and long non-coding RNAs (lncRNAs), have become increasingly evident. Using specific arrays, an exploratory analysis testing the expression levels of 84 miRNAs and 84 lncRNAs has been performed in a population consisting of 24 genetic FTD patients (eight GRN, eight C9ORF72, and eight MAPT mutation carriers), eight sporadic FTD patients, and eight healthy controls. The results showed a generalized ncRNA downregulation in patients carrying GRN and C9ORF72 when compared with the controls, with statistically significant results for the following miRNAs: miR-155-5p (Fold Change FC: 0.45, p = 0.037 FDR = 0.52), miR-15a-5p (FC: 0.13, p = 0.027, FDR = 1), miR-222-3p (FC: 0.13, p = 0.027, FDR = 0.778), miR-140-3p (FC: 0.096, p = 0.034, FRD = 0.593), miR-106b-5p (FC: 0.13, p = 0.02, FDR = 0.584) and an upregulation solely for miR-124-3p (FC: 2.1, p = 0.01, FDR = 0.893). Conversely, MAPT mutation carriers showed a generalized robust upregulation in several ncRNAs, specifically for miR-222-3p (FC: 22.3, p = 7 × 10(−6), FDR = 0.117), miR-15a-5p (FC: 30.2, p = 0.008, FDR = 0.145), miR-27a-3p (FC: 27.8, p = 6 × 10(−6), FDR = 0.0005), miR-223-3p (FC: 18.9, p = 0.005, FDR = 0.117), and miR-16-5p (FC: 10.9, p = 5.26 × 10(−5), FDR = 0.001). These results suggest a clear, distinctive pattern of dysregulation among ncRNAs and specific enrichment gene pathways between mutations associated with the TDP-43 and tau pathologies. Nevertheless, these preliminary results need to be confirmed in a larger independent cohort. MDPI 2022-11-25 /pmc/articles/PMC9737170/ /pubmed/36499048 http://dx.doi.org/10.3390/ijms232314723 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Fenoglio, Chiara
Serpente, Maria
Visconte, Caterina
Arcaro, Marina
Sorrentino, Federica
D’Anca, Marianna
Arighi, Andrea
Rotondo, Emanuela
Vimercati, Roberto
Rossi, Giacomina
Scarpini, Elio
Galimberti, Daniela
Circulating Non-Coding RNA Levels Are Altered in Autosomal Dominant Frontotemporal Dementia
title Circulating Non-Coding RNA Levels Are Altered in Autosomal Dominant Frontotemporal Dementia
title_full Circulating Non-Coding RNA Levels Are Altered in Autosomal Dominant Frontotemporal Dementia
title_fullStr Circulating Non-Coding RNA Levels Are Altered in Autosomal Dominant Frontotemporal Dementia
title_full_unstemmed Circulating Non-Coding RNA Levels Are Altered in Autosomal Dominant Frontotemporal Dementia
title_short Circulating Non-Coding RNA Levels Are Altered in Autosomal Dominant Frontotemporal Dementia
title_sort circulating non-coding rna levels are altered in autosomal dominant frontotemporal dementia
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9737170/
https://www.ncbi.nlm.nih.gov/pubmed/36499048
http://dx.doi.org/10.3390/ijms232314723
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