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Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum)
FK506-binding protein (FKBP) genes have been found to play vital roles in plant development and abiotic stress responses. However, limited information is available about this gene family in wheat (Triticum aestivum L.). In this study, a total of 64 FKBP genes were identified in wheat via a genome-wi...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9739119/ https://www.ncbi.nlm.nih.gov/pubmed/36498828 http://dx.doi.org/10.3390/ijms232314501 |
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author | Ge, Qiang Peng, Peipei Cheng, Mingyue Meng, Yanjun Cao, Yuan Zhang, Shuya Long, Yu Li, Gezi Kang, Guozhang |
author_facet | Ge, Qiang Peng, Peipei Cheng, Mingyue Meng, Yanjun Cao, Yuan Zhang, Shuya Long, Yu Li, Gezi Kang, Guozhang |
author_sort | Ge, Qiang |
collection | PubMed |
description | FK506-binding protein (FKBP) genes have been found to play vital roles in plant development and abiotic stress responses. However, limited information is available about this gene family in wheat (Triticum aestivum L.). In this study, a total of 64 FKBP genes were identified in wheat via a genome-wide analysis involving a homologous search of the latest wheat genome data, which was unevenly distributed in 21 chromosomes, encoded 152 to 649 amino acids with molecular weights ranging from 16 kDa to 72 kDa, and was localized in the chloroplast, cytoplasm, nucleus, mitochondria, peroxisome and endoplasmic reticulum. Based on sequence alignment and phylogenetic analysis, 64 TaFKBPs were divided into four different groups or subfamilies, providing evidence of an evolutionary relationship with Aegilops tauschii, Brachypodium distachyon, Triticum dicoccoides, Arabidopsis thaliana and Oryza sativa. Hormone-related, abiotic stress-related and development-related cis-elements were preferentially presented in promoters of TaFKBPs. The expression levels of TaFKBP genes were investigated using transcriptome data from the WheatExp database, which exhibited tissue-specific expression patterns. Moreover, TaFKBPs responded to drought and heat stress, and nine of them were randomly selected for validation by qRT-PCR. Yeast cells expressing TaFKBP19-2B-2 or TaFKBP18-6B showed increased influence on drought stress, indicating their negative roles in drought tolerance. Collectively, our results provide valuable information about the FKBP gene family in wheat and contribute to further characterization of FKBPs during plant development and abiotic stress responses, especially in drought stress. |
format | Online Article Text |
id | pubmed-9739119 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-97391192022-12-11 Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum) Ge, Qiang Peng, Peipei Cheng, Mingyue Meng, Yanjun Cao, Yuan Zhang, Shuya Long, Yu Li, Gezi Kang, Guozhang Int J Mol Sci Article FK506-binding protein (FKBP) genes have been found to play vital roles in plant development and abiotic stress responses. However, limited information is available about this gene family in wheat (Triticum aestivum L.). In this study, a total of 64 FKBP genes were identified in wheat via a genome-wide analysis involving a homologous search of the latest wheat genome data, which was unevenly distributed in 21 chromosomes, encoded 152 to 649 amino acids with molecular weights ranging from 16 kDa to 72 kDa, and was localized in the chloroplast, cytoplasm, nucleus, mitochondria, peroxisome and endoplasmic reticulum. Based on sequence alignment and phylogenetic analysis, 64 TaFKBPs were divided into four different groups or subfamilies, providing evidence of an evolutionary relationship with Aegilops tauschii, Brachypodium distachyon, Triticum dicoccoides, Arabidopsis thaliana and Oryza sativa. Hormone-related, abiotic stress-related and development-related cis-elements were preferentially presented in promoters of TaFKBPs. The expression levels of TaFKBP genes were investigated using transcriptome data from the WheatExp database, which exhibited tissue-specific expression patterns. Moreover, TaFKBPs responded to drought and heat stress, and nine of them were randomly selected for validation by qRT-PCR. Yeast cells expressing TaFKBP19-2B-2 or TaFKBP18-6B showed increased influence on drought stress, indicating their negative roles in drought tolerance. Collectively, our results provide valuable information about the FKBP gene family in wheat and contribute to further characterization of FKBPs during plant development and abiotic stress responses, especially in drought stress. MDPI 2022-11-22 /pmc/articles/PMC9739119/ /pubmed/36498828 http://dx.doi.org/10.3390/ijms232314501 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Ge, Qiang Peng, Peipei Cheng, Mingyue Meng, Yanjun Cao, Yuan Zhang, Shuya Long, Yu Li, Gezi Kang, Guozhang Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum) |
title | Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum) |
title_full | Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum) |
title_fullStr | Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum) |
title_full_unstemmed | Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum) |
title_short | Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum) |
title_sort | genome-wide identification and analysis of fkbp gene family in wheat (triticum asetivum) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9739119/ https://www.ncbi.nlm.nih.gov/pubmed/36498828 http://dx.doi.org/10.3390/ijms232314501 |
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