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Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum)

FK506-binding protein (FKBP) genes have been found to play vital roles in plant development and abiotic stress responses. However, limited information is available about this gene family in wheat (Triticum aestivum L.). In this study, a total of 64 FKBP genes were identified in wheat via a genome-wi...

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Autores principales: Ge, Qiang, Peng, Peipei, Cheng, Mingyue, Meng, Yanjun, Cao, Yuan, Zhang, Shuya, Long, Yu, Li, Gezi, Kang, Guozhang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9739119/
https://www.ncbi.nlm.nih.gov/pubmed/36498828
http://dx.doi.org/10.3390/ijms232314501
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author Ge, Qiang
Peng, Peipei
Cheng, Mingyue
Meng, Yanjun
Cao, Yuan
Zhang, Shuya
Long, Yu
Li, Gezi
Kang, Guozhang
author_facet Ge, Qiang
Peng, Peipei
Cheng, Mingyue
Meng, Yanjun
Cao, Yuan
Zhang, Shuya
Long, Yu
Li, Gezi
Kang, Guozhang
author_sort Ge, Qiang
collection PubMed
description FK506-binding protein (FKBP) genes have been found to play vital roles in plant development and abiotic stress responses. However, limited information is available about this gene family in wheat (Triticum aestivum L.). In this study, a total of 64 FKBP genes were identified in wheat via a genome-wide analysis involving a homologous search of the latest wheat genome data, which was unevenly distributed in 21 chromosomes, encoded 152 to 649 amino acids with molecular weights ranging from 16 kDa to 72 kDa, and was localized in the chloroplast, cytoplasm, nucleus, mitochondria, peroxisome and endoplasmic reticulum. Based on sequence alignment and phylogenetic analysis, 64 TaFKBPs were divided into four different groups or subfamilies, providing evidence of an evolutionary relationship with Aegilops tauschii, Brachypodium distachyon, Triticum dicoccoides, Arabidopsis thaliana and Oryza sativa. Hormone-related, abiotic stress-related and development-related cis-elements were preferentially presented in promoters of TaFKBPs. The expression levels of TaFKBP genes were investigated using transcriptome data from the WheatExp database, which exhibited tissue-specific expression patterns. Moreover, TaFKBPs responded to drought and heat stress, and nine of them were randomly selected for validation by qRT-PCR. Yeast cells expressing TaFKBP19-2B-2 or TaFKBP18-6B showed increased influence on drought stress, indicating their negative roles in drought tolerance. Collectively, our results provide valuable information about the FKBP gene family in wheat and contribute to further characterization of FKBPs during plant development and abiotic stress responses, especially in drought stress.
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spelling pubmed-97391192022-12-11 Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum) Ge, Qiang Peng, Peipei Cheng, Mingyue Meng, Yanjun Cao, Yuan Zhang, Shuya Long, Yu Li, Gezi Kang, Guozhang Int J Mol Sci Article FK506-binding protein (FKBP) genes have been found to play vital roles in plant development and abiotic stress responses. However, limited information is available about this gene family in wheat (Triticum aestivum L.). In this study, a total of 64 FKBP genes were identified in wheat via a genome-wide analysis involving a homologous search of the latest wheat genome data, which was unevenly distributed in 21 chromosomes, encoded 152 to 649 amino acids with molecular weights ranging from 16 kDa to 72 kDa, and was localized in the chloroplast, cytoplasm, nucleus, mitochondria, peroxisome and endoplasmic reticulum. Based on sequence alignment and phylogenetic analysis, 64 TaFKBPs were divided into four different groups or subfamilies, providing evidence of an evolutionary relationship with Aegilops tauschii, Brachypodium distachyon, Triticum dicoccoides, Arabidopsis thaliana and Oryza sativa. Hormone-related, abiotic stress-related and development-related cis-elements were preferentially presented in promoters of TaFKBPs. The expression levels of TaFKBP genes were investigated using transcriptome data from the WheatExp database, which exhibited tissue-specific expression patterns. Moreover, TaFKBPs responded to drought and heat stress, and nine of them were randomly selected for validation by qRT-PCR. Yeast cells expressing TaFKBP19-2B-2 or TaFKBP18-6B showed increased influence on drought stress, indicating their negative roles in drought tolerance. Collectively, our results provide valuable information about the FKBP gene family in wheat and contribute to further characterization of FKBPs during plant development and abiotic stress responses, especially in drought stress. MDPI 2022-11-22 /pmc/articles/PMC9739119/ /pubmed/36498828 http://dx.doi.org/10.3390/ijms232314501 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ge, Qiang
Peng, Peipei
Cheng, Mingyue
Meng, Yanjun
Cao, Yuan
Zhang, Shuya
Long, Yu
Li, Gezi
Kang, Guozhang
Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum)
title Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum)
title_full Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum)
title_fullStr Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum)
title_full_unstemmed Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum)
title_short Genome-Wide Identification and Analysis of FKBP Gene Family in Wheat (Triticum asetivum)
title_sort genome-wide identification and analysis of fkbp gene family in wheat (triticum asetivum)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9739119/
https://www.ncbi.nlm.nih.gov/pubmed/36498828
http://dx.doi.org/10.3390/ijms232314501
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