Cargando…

Systematic Comparison of Plant Promoters in Nicotiana spp. Expression Systems

We report a systematic comparison of 19 plant promoters and 20 promoter-terminator combinations in two expression systems: agroinfiltration in Nicotiana benthamiana leaves, and Nicotiana tabacum BY-2 plant cell packs. The set of promoters tested comprised those not present in previously published wo...

Descripción completa

Detalles Bibliográficos
Autores principales: Shakhova, Ekaterina S., Markina, Nadezhda M., Mitiouchkina, Tatiana, Bugaeva, Evgenia N., Karataeva, Tatiana A., Palkina, Kseniia A., Fakhranurova, Liliia I., Yampolsky, Ilia V., Sarkisyan, Karen S., Mishin, Alexander S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9740895/
https://www.ncbi.nlm.nih.gov/pubmed/36499768
http://dx.doi.org/10.3390/ijms232315441
_version_ 1784848180587790336
author Shakhova, Ekaterina S.
Markina, Nadezhda M.
Mitiouchkina, Tatiana
Bugaeva, Evgenia N.
Karataeva, Tatiana A.
Palkina, Kseniia A.
Fakhranurova, Liliia I.
Yampolsky, Ilia V.
Sarkisyan, Karen S.
Mishin, Alexander S.
author_facet Shakhova, Ekaterina S.
Markina, Nadezhda M.
Mitiouchkina, Tatiana
Bugaeva, Evgenia N.
Karataeva, Tatiana A.
Palkina, Kseniia A.
Fakhranurova, Liliia I.
Yampolsky, Ilia V.
Sarkisyan, Karen S.
Mishin, Alexander S.
author_sort Shakhova, Ekaterina S.
collection PubMed
description We report a systematic comparison of 19 plant promoters and 20 promoter-terminator combinations in two expression systems: agroinfiltration in Nicotiana benthamiana leaves, and Nicotiana tabacum BY-2 plant cell packs. The set of promoters tested comprised those not present in previously published work, including several computationally predicted synthetic promoters validated here for the first time. The expression of EGFP driven by different promoters varied by more than two orders of magnitude and was largely consistent between two tested Nicotiana systems. We confirmed previous reports of significant modulation of expression by terminators, as well as synergistic effects of promoters and terminators. Additionally, we observed non-linear effects of gene dosage on expression level. The dataset presented here can inform the design of genetic constructs for plant engineering and transient expression assays.
format Online
Article
Text
id pubmed-9740895
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-97408952022-12-11 Systematic Comparison of Plant Promoters in Nicotiana spp. Expression Systems Shakhova, Ekaterina S. Markina, Nadezhda M. Mitiouchkina, Tatiana Bugaeva, Evgenia N. Karataeva, Tatiana A. Palkina, Kseniia A. Fakhranurova, Liliia I. Yampolsky, Ilia V. Sarkisyan, Karen S. Mishin, Alexander S. Int J Mol Sci Article We report a systematic comparison of 19 plant promoters and 20 promoter-terminator combinations in two expression systems: agroinfiltration in Nicotiana benthamiana leaves, and Nicotiana tabacum BY-2 plant cell packs. The set of promoters tested comprised those not present in previously published work, including several computationally predicted synthetic promoters validated here for the first time. The expression of EGFP driven by different promoters varied by more than two orders of magnitude and was largely consistent between two tested Nicotiana systems. We confirmed previous reports of significant modulation of expression by terminators, as well as synergistic effects of promoters and terminators. Additionally, we observed non-linear effects of gene dosage on expression level. The dataset presented here can inform the design of genetic constructs for plant engineering and transient expression assays. MDPI 2022-12-06 /pmc/articles/PMC9740895/ /pubmed/36499768 http://dx.doi.org/10.3390/ijms232315441 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Shakhova, Ekaterina S.
Markina, Nadezhda M.
Mitiouchkina, Tatiana
Bugaeva, Evgenia N.
Karataeva, Tatiana A.
Palkina, Kseniia A.
Fakhranurova, Liliia I.
Yampolsky, Ilia V.
Sarkisyan, Karen S.
Mishin, Alexander S.
Systematic Comparison of Plant Promoters in Nicotiana spp. Expression Systems
title Systematic Comparison of Plant Promoters in Nicotiana spp. Expression Systems
title_full Systematic Comparison of Plant Promoters in Nicotiana spp. Expression Systems
title_fullStr Systematic Comparison of Plant Promoters in Nicotiana spp. Expression Systems
title_full_unstemmed Systematic Comparison of Plant Promoters in Nicotiana spp. Expression Systems
title_short Systematic Comparison of Plant Promoters in Nicotiana spp. Expression Systems
title_sort systematic comparison of plant promoters in nicotiana spp. expression systems
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9740895/
https://www.ncbi.nlm.nih.gov/pubmed/36499768
http://dx.doi.org/10.3390/ijms232315441
work_keys_str_mv AT shakhovaekaterinas systematiccomparisonofplantpromotersinnicotianasppexpressionsystems
AT markinanadezhdam systematiccomparisonofplantpromotersinnicotianasppexpressionsystems
AT mitiouchkinatatiana systematiccomparisonofplantpromotersinnicotianasppexpressionsystems
AT bugaevaevgenian systematiccomparisonofplantpromotersinnicotianasppexpressionsystems
AT karataevatatianaa systematiccomparisonofplantpromotersinnicotianasppexpressionsystems
AT palkinakseniiaa systematiccomparisonofplantpromotersinnicotianasppexpressionsystems
AT fakhranurovaliliiai systematiccomparisonofplantpromotersinnicotianasppexpressionsystems
AT yampolskyiliav systematiccomparisonofplantpromotersinnicotianasppexpressionsystems
AT sarkisyankarens systematiccomparisonofplantpromotersinnicotianasppexpressionsystems
AT mishinalexanders systematiccomparisonofplantpromotersinnicotianasppexpressionsystems